CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, peroxisome
Any Predictor:	cytoskeleton, cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58809	Canola	peroxisome	99.74	99.74
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	99.74	86.97
Bra034664.1-P	Field mustard	cytosol	80.41	83.87
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	92.78	83.53
CDY58810	Canola	peroxisome	61.34	74.61
CDY17493	Canola	peroxisome	60.82	74.21
AT4G34930.1	Thale cress	plastid	66.75	66.24
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	52.58	64.15
PGSC0003DMT400059705	Potato	cytosol	52.06	63.52
Solyc10g055240.1.1	Tomato	cytosol	51.8	63.21
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	51.29	62.58
Solyc01g111260.2.1	Tomato	nucleus	51.03	62.26
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	51.03	62.26
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	51.8	62.23
CDX90289	Canola	cytosol	50.0	61.01
CDY12097	Canola	plasma membrane	49.48	60.38
KRH51412	Soybean	cytosol	47.94	58.68
KRH24254	Soybean	cytosol	47.42	58.04
KRH29259	Soybean	plasma membrane	36.34	55.73
TraesCS5A01G328000.1	Wheat	cytosol	45.88	55.11
EER99259	Sorghum	cytosol	47.94	54.87
Zm00001d006231_P001	Maize	cytosol, mitochondrion	44.85	54.55
TraesCS5B01G328000.1	Wheat	plastid	45.36	54.49
TraesCS5D01G333500.1	Wheat	cytosol	46.91	54.17
TraesCS5A01G327600.1	Wheat	cytosol	47.16	54.14
TraesCS5D01G333900.1	Wheat	plastid	44.85	53.87
TraesCS5B01G327500.1	Wheat	cytosol	46.91	53.85
HORVU5Hr1G083100.1	Barley	plastid	44.59	53.56
PGSC0003DMT400059701	Potato	cytosol	28.09	52.15
HORVU5Hr1G045890.1	Barley	plastid	41.49	48.49
HORVU5Hr1G082990.1	Barley	plastid	19.85	20.21

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.2	GO:A0A078CJS4	EnsemblPlants:CDX76304	ProteinID:CDX76304	ProteinID:CDX76304.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00126672001	InterPro:IPR000909	InterPro:IPR017946	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom
PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	SMART:SM00148	SUPFAM:SSF51695	UniParc:UPI0004EE0723

Description

BnaA08g10960D

Coordinates

chrLK031807:+:243539..244838

Molecular Weight (calculated)

44713.2 Da

IEP (calculated)

5.668

GRAVY (calculated)

-0.252

Length

388 amino acids

Sequence
(BLAST)

001: MDFFKNLADS FVKEVVDPTV SFAEDSARTV LREVVDPTVA FVEDSARTVV REVIDPAVAF IETQFQRPRD VIEQEKILDN LLASNGSRFP GDDYHSPDRK
101: NWMAHLSVEK LTLNKIVWPG THDSATNGIG IDVVTRPLGE CQTLSIYEQL VRGTRLLDVR VQEDRHICHG ILASYKVDFV IDDVIRFLSE THSEIIILEI
201: RTEYGHRDPP EFESYLTNKL GQFLIHQNDN LFNKSLSEIL PKRVICIGGG RKYFSLSYTI FLILLESPRP SRGGRLWNSD YLKDNWIDTD LPWTKFQSNM
301: NHLKDQPSLS SRRFFYRVEN TLTPQADNVV VWVRPVTDRI RRYARLFISR CIAEGCIDKL QIFSTDFIDE DFVDACVGLT YARINGRI

Best Arabidopsis Sequence Match ( AT4G34930.1 )
(BLAST)

001: MSFFGKLADT VVSFANDSAK SVVEEVVNPT VSFANNSART VVEEVVNPTV SFANDSARTV VEKVLNPTVS FIDSQLQRPR DVLVQQQILD NLQESNGSNF
101: PGDDYHSPDR KNWMAHLSVD KLTLNKIVWP GTHDSATNGI GDPLVTRWLG ECQTLSIFDQ LVLGTRVLDI RFQEDRCVCH GALSSYNVDV VLNDVIRFVS
201: ETQSEIIILE IRTEFGKKDP FEFETYLVDK LGQFLIHQDD NLFNKPVSEI LPKRVICIWK PRESPKPSRG GILWNSDYLK DNWIDTDLPW TKFQSNLKHL
301: SEQQPISSRK FFYRVENTVT PQADNPVVWV KQVTDRIRKH ARLFISQCAS KGYGDKLQIL STDFIEGDFV DACVGLTHAR MKGQFDKISP S

Arabidopsis Description

At4g34930 [Source:UniProtKB/TrEMBL;Acc:Q9SW42]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.