CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	CDY04768	AT1G22920.1	21798944
AT4G34920.1	CDY21400	AT1G22920.1	21798944
AT4G34920.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58810	Canola	peroxisome	98.11	97.81
AT4G34920.1	Thale cress	cytosol	88.68	88.68
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	69.5	69.5
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	69.18	69.18
Solyc01g111260.2.1	Tomato	nucleus	67.92	67.92
CDX90289	Canola	cytosol	67.3	67.3
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	67.3	67.3
CDY12097	Canola	plasma membrane	66.98	66.98
Solyc10g055240.1.1	Tomato	cytosol	66.67	66.67
PGSC0003DMT400059705	Potato	cytosol	66.35	66.35
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	66.98	65.94
KRH51412	Soybean	cytosol	64.78	64.98
KRH24254	Soybean	cytosol	64.47	64.67
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	74.21	60.82
CDY58809	Canola	peroxisome	73.9	60.57
KRH29259	Soybean	plasma membrane	48.11	60.47
Zm00001d006231_P001	Maize	cytosol, mitochondrion	57.86	57.68
EER99259	Sorghum	cytosol	60.38	56.64
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	76.1	56.15
TraesCS5B01G328000.1	Wheat	plastid	56.6	55.73
HORVU5Hr1G083100.1	Barley	plastid	56.29	55.42
TraesCS5A01G328000.1	Wheat	cytosol	56.29	55.42
TraesCS5D01G333900.1	Wheat	plastid	56.29	55.42
TraesCS5D01G333500.1	Wheat	cytosol	58.18	55.06
TraesCS5A01G327600.1	Wheat	cytosol	58.49	55.03
TraesCS5B01G327500.1	Wheat	cytosol	58.49	55.03
PGSC0003DMT400059701	Potato	cytosol	35.53	54.07
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	74.21	53.03
HORVU5Hr1G045890.1	Barley	plastid	53.14	50.9
HORVU5Hr1G082990.1	Barley	plastid	25.47	21.26

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.2	GO:A0A078FYT4	UniProt:A0A078FYT4	EnsemblPlants:CDY17493	ProteinID:CDY17493
ProteinID:CDY17493.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00095680001	InterPro:IPR000909	InterPro:IPR017946	InterPro:PLC-like_Pdiesterase_TIM-brl
InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	SMART:SM00148	SUPFAM:SSF51695
UniParc:UPI0004EF3C62	:	:	:	:	:

Description

BnaC03g65700DBnaC03g65700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYT4]

Coordinates

chrLK032074:+:273772..274994

Molecular Weight (calculated)

36386.1 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.434

Length

318 amino acids

Sequence
(BLAST)

001: MLSFFSDQID KHKAVSEEEK TLNDLEQSEG SHFPGDDYRP SDRKNWMAGL DVEKLTLSKI VWPGTHDSAT NDIGIPLVSR PLAECQTLSI YDQLVLGTRV
101: LDIRVQEDRH ICHGILTSYN VDAVIDDVIR FLSETNSEII ILEIRTEYGH KDPPEFETYL ADKLGQFLIQ QDDNLFNKAV SEILPKRVIC IWKPRESPKP
201: SGGGLLWNSD YLKDNWIDTD LPWKKFQSNL KHLSEQQPIS SRKYFYRVEN TVTPQADNPV VWVKPVTDRI RKHARLFISQ CVAKGCGDKL QILSTDLIEE
301: DFVDACVGFT HARIEGKV

Best Arabidopsis Sequence Match ( AT4G34920.1 )
(BLAST)

001: MLSFFSNQID RQKDVSNEEK TLTNLEKSDG SQFPGDDYRP SDRKNWMAGL TLEKLTLNKI VWPGTHDSAT NDIGIPLISR PLAECQSLSI YEQLVLGTRV
101: LDIRVQEDRQ ICHGILTSYE IDVVIDDVIR FLSETHSEIV ILEIRTEFGH KDPPGFETYL ADKLGQFLIH QDDSLFNKPV SEILPKRVIC IWKPRESPKP
201: SRGGILWNSD YLKDNWIDTD LPWTKFQSNL KHLSEQQPTS SRKFFYRVEN TVTPQADNPV VWVKPVTDRI RKHARLFISQ CVSKGCGDKL QILSTDFIEG
301: DFVDACVGLT HARIEGKV

Arabidopsis Description

AT4g34920/F11I11_160 [Source:UniProtKB/TrEMBL;Acc:Q9SW43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.