Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99259 | Sorghum | cytosol | 88.71 | 83.48 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 82.13 | 77.98 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 82.13 | 77.51 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 78.06 | 77.09 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 81.5 | 76.92 |
| TraesCS5B01G328000.1 | Wheat | plastid | 77.74 | 76.78 |
| HORVU5Hr1G083100.1 | Barley | plastid | 76.8 | 75.85 |
| TraesCS5D01G333900.1 | Wheat | plastid | 76.18 | 75.23 |
| HORVU5Hr1G045890.1 | Barley | plastid | 70.85 | 68.07 |
| Bra010731.1-P | Field mustard | cytosol | 67.4 | 67.61 |
| CDX90289 | Canola | cytosol | 67.4 | 67.61 |
| KRH51412 | Soybean | cytosol | 67.08 | 67.51 |
| CDY12097 | Canola | plasma membrane | 66.77 | 66.98 |
| AT4G38690.1 | Thale cress | cytosol | 66.14 | 66.35 |
| KRH24254 | Soybean | cytosol | 63.64 | 64.04 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 62.07 | 62.26 |
| KRH29259 | Soybean | plasma membrane | 49.22 | 62.06 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 61.76 | 61.95 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 61.13 | 61.32 |
| PGSC0003DMT400059705 | Potato | cytosol | 61.13 | 61.32 |
| Solyc01g111260.2.1 | Tomato | nucleus | 60.81 | 61.01 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 61.13 | 60.37 |
| Solyc10g055240.1.1 | Tomato | cytosol | 59.87 | 60.06 |
| AT4G34920.1 | Thale cress | cytosol | 59.56 | 59.75 |
| CDY17493 | Canola | peroxisome | 57.68 | 57.86 |
| CDY58810 | Canola | peroxisome | 57.68 | 57.68 |
| Bra034663.1-P | Field mustard | cytosol | 57.37 | 57.55 |
| PGSC0003DMT400059701 | Potato | cytosol | 31.97 | 48.8 |
| AT4G34930.1 | Thale cress | plastid | 55.49 | 45.27 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 54.55 | 44.85 |
| CDY58809 | Canola | peroxisome | 54.23 | 44.59 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 54.86 | 40.6 |
| Bra034664.1-P | Field mustard | cytosol | 46.08 | 39.52 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 54.55 | 39.1 |
| HORVU5Hr1G082990.1 | Barley | plastid | 35.11 | 29.4 |
Protein Annotations
| EntrezGene:100383963 | Gene3D:3.20.20.190 | MapMan:35.2 | EMBL:BT068732 | UniProt:C0PKB3 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| InterPro:IPR000909 | InterPro:IPR017946 | ProteinID:ONM23141.1 | InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom | PFscan:PS50007 |
| PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | SMART:SM00148 | SUPFAM:SSF51695 | UniParc:UPI000195CD98 | EnsemblPlantsGene:Zm00001d006231 |
| EnsemblPlants:Zm00001d006231_P001 | EnsemblPlants:Zm00001d006231_T001 | : | : | : | : |
Description
PLC-like phosphodiesterases superfamily protein
Coordinates
chr2:-:202413009..202414316
Molecular Weight (calculated)
35688.8 Da
IEP (calculated)
8.231
GRAVY (calculated)
-0.243
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAFFSKQVD RRKLVAAEKR ALATRLSSSG DTFPGSEHRP ADRKRWMAEL GAGRLRVHQV VWPGTHDSAT DRIGVPFVTR PFAQCQSLSV YEQLALGARV
101: LDVRVQKGRR VCHGVLATYP VDVVLDDVTR FLGETESEVV VLEVRTEFGH EDPPEFGRFL VERLGEHLLI PQDEAVFHKT VAELLPRRVI CVWKPRRSPA
201: PGPGEPLWSA GYLRDNWIDT DLPETKFESN LKFLGQQPPV AGRGFLYRVE NTVTPRPDNP VVCVWPVTRR IHGYARMFIA EVFAKGLGDK LQVFSTDFID
301: GDFVDACAGV TKARVDGTA
101: LDVRVQKGRR VCHGVLATYP VDVVLDDVTR FLGETESEVV VLEVRTEFGH EDPPEFGRFL VERLGEHLLI PQDEAVFHKT VAELLPRRVI CVWKPRRSPA
201: PGPGEPLWSA GYLRDNWIDT DLPETKFESN LKFLGQQPPV AGRGFLYRVE NTVTPRPDNP VVCVWPVTRR IHGYARMFIA EVFAKGLGDK LQVFSTDFID
301: GDFVDACAGV TKARVDGTA
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.