Factsheet for Bra034663.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G34920.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58810	Canola	peroxisome	98.11	97.81
AT4G34920.1	Thale cress	cytosol	87.74	87.74
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	68.55	68.55
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	67.92	67.92
Bra010731.1-P	Field mustard	cytosol	67.61	67.61
Solyc01g111260.2.1	Tomato	nucleus	67.61	67.61
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	67.61	67.61
Solyc10g055240.1.1	Tomato	cytosol	66.67	66.67
PGSC0003DMT400059705	Potato	cytosol	66.35	66.35
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	66.67	65.63
KRH51412	Soybean	cytosol	65.09	65.3
KRH24254	Soybean	cytosol	63.52	63.72
KRH29259	Soybean	plasma membrane	47.48	59.68
Zm00001d006231_P001	Maize	cytosol, mitochondrion	57.55	57.37
Bra034664.1-P	Field mustard	cytosol	65.41	55.91
EER99259	Sorghum	cytosol	59.12	55.46
TraesCS5B01G328000.1	Wheat	plastid	56.29	55.42
TraesCS5A01G328000.1	Wheat	cytosol	55.66	54.8
TraesCS5D01G333900.1	Wheat	plastid	55.66	54.8
TraesCS5D01G333500.1	Wheat	cytosol	57.86	54.76
TraesCS5A01G327600.1	Wheat	cytosol	58.18	54.73
TraesCS5B01G327500.1	Wheat	cytosol	58.18	54.73
HORVU5Hr1G083100.1	Barley	plastid	55.35	54.49
PGSC0003DMT400059701	Potato	cytosol	34.59	52.63
HORVU5Hr1G045890.1	Barley	plastid	52.2	50.0
HORVU5Hr1G082990.1	Barley	plastid	24.84	20.73

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.2	EnsemblPlantsGene:Bra034663	EnsemblPlants:Bra034663.1	EnsemblPlants:Bra034663.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909
InterPro:IPR017946	UniProt:M4F0R8	PFAM:PF00388	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007
PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	SMART:SM00148	SUPFAM:SSF51695	UniParc:UPI00025461C2	:

Description

AT4G34920 (E=5e-167) | 1-phosphatidylinositol phosphodiesterase-related

Coordinates

chrA08:-:12215588..12216544

Molecular Weight (calculated)

36639.4 Da

IEP (calculated)

5.275

GRAVY (calculated)

-0.478

Length

318 amino acids

Sequence
(BLAST)

001: MLSFFSDQID KHKAVSEEEK TINDLEQSEG SHFPGDDYRP SDRKNWMAGL DVEKLTLNKI VWPGTHDSAT NDIGIPLVSR PLAECQTLSI YDQLVLGTRV
101: LDIRVQEDRH ICHGILTSYN VDDVINDVIR FLSETHSEIV ILEMRTEYGH KDPPEFETYL TDKLGQFLIQ QDDNLFNKAV SEILPKRVIC IWKPRESAKP
201: NRGGLLWNSD YLKDNWIDTD LPWKKFQSNL KHLSEQQPIS SRKYFYRVEN TVTPQADNPV VWVKPVTDRI RKYARLFISQ CVAKGCGDKL QILSTDLIEE
301: DFVDACVGFT HARIEGKV

Best Arabidopsis Sequence Match ( AT4G34920.1 )
(BLAST)

001: MLSFFSNQID RQKDVSNEEK TLTNLEKSDG SQFPGDDYRP SDRKNWMAGL TLEKLTLNKI VWPGTHDSAT NDIGIPLISR PLAECQSLSI YEQLVLGTRV
101: LDIRVQEDRQ ICHGILTSYE IDVVIDDVIR FLSETHSEIV ILEIRTEFGH KDPPGFETYL ADKLGQFLIH QDDSLFNKPV SEILPKRVIC IWKPRESPKP
201: SRGGILWNSD YLKDNWIDTD LPWTKFQSNL KHLSEQQPTS SRKFFYRVEN TVTPQADNPV VWVKPVTDRI RKHARLFISQ CVSKGCGDKL QILSTDFIEG
301: DFVDACVGLT HARIEGKV

Arabidopsis Description

AT4g34920/F11I11_160 [Source:UniProtKB/TrEMBL;Acc:Q9SW43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.