CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	KRH52586	AT1G22920.1	21798944
AT4G34920.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24254	Soybean	cytosol	79.81	79.81
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	77.6	77.36
AT4G38690.1	Thale cress	cytosol	75.39	75.16
Bra010731.1-P	Field mustard	cytosol	75.39	75.16
CDX90289	Canola	cytosol	75.39	75.16
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	75.08	74.84
CDY12097	Canola	plasma membrane	75.08	74.84
Solyc01g111260.2.1	Tomato	nucleus	74.45	74.21
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	74.45	74.21
PGSC0003DMT400059705	Potato	cytosol	73.5	73.27
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	74.45	73.06
Solyc10g055240.1.1	Tomato	cytosol	72.24	72.01
KRH29259	Soybean	plasma membrane	57.41	71.94
Zm00001d006231_P001	Maize	cytosol, mitochondrion	67.51	67.08
EER99259	Sorghum	cytosol	71.29	66.67
AT4G34920.1	Thale cress	cytosol	65.62	65.41
Bra034663.1-P	Field mustard	cytosol	65.3	65.09
CDY58810	Canola	peroxisome	65.3	64.89
CDY17493	Canola	peroxisome	64.98	64.78
TraesCS5D01G333500.1	Wheat	cytosol	68.45	64.58
TraesCS5A01G327600.1	Wheat	cytosol	68.77	64.5
TraesCS5B01G327500.1	Wheat	cytosol	68.45	64.2
TraesCS5A01G328000.1	Wheat	cytosol	64.04	62.85
TraesCS5B01G328000.1	Wheat	plastid	63.72	62.54
TraesCS5D01G333900.1	Wheat	plastid	63.72	62.54
HORVU5Hr1G083100.1	Barley	plastid	63.41	62.23
PGSC0003DMT400059701	Potato	cytosol	38.17	57.89
HORVU5Hr1G045890.1	Barley	plastid	58.68	56.02
AT4G34930.1	Thale cress	plastid	61.51	49.87
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	58.68	47.94
CDY58809	Canola	peroxisome	58.36	47.68
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	58.68	43.16
Bra034664.1-P	Field mustard	cytosol	49.21	41.94
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	58.68	41.8
HORVU5Hr1G082990.1	Barley	plastid	30.28	25.2

Protein Annotations

EntrezGene:100805096	Gene3D:3.20.20.190	MapMan:35.2	EMBL:ACUP02003373	EnsemblPlantsGene:GLYMA_06G004800	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
UniProt:I1K702	InterPro:IPR000909	InterPro:IPR017946	EnsemblPlants:KRH51412	ProteinID:KRH51412	ProteinID:KRH51412.1
PFAM:PF00388	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35
SMART:SM00148	SUPFAM:SSF51695	UniParc:UPI00023392D8	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:414475..415992

Molecular Weight (calculated)

36201.2 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.496

Length

317 amino acids

Sequence
(BLAST)

001: MGSEVSKQME RRKTIQTEKK SLSDLKSSGE DYPGSDYRPQ DRKNWMSHLD PQKLRINQIV WPGTHDSATN KIGIPLLTRP FAQCQSLSIY RQLSLGTRVL
101: DIRVQEHRRV CHGILLTYGV DLVLNDVKKF LSDTQSEILI LEIRTEFGHE DPPEFDKYLE EQLGEHLIHQ DDAVFGKTVA ELLPKRVICV WKPRKSSQPK
201: PGSPLWSAGF LKDNWINTDL PSTKFDGNLN HLSEHPPVTS RKYFYRIENT VTPVADNPVL CVKPVTRRIH GYARLFIAQC FAKGFADRLQ VFSTDFIDED
301: FVDACAGLTH ARVEGKA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.