Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12097 | Canola | plasma membrane | 94.34 | 94.34 |
| Bra010731.1-P | Field mustard | cytosol | 94.03 | 94.03 |
| CDX90289 | Canola | cytosol | 94.03 | 94.03 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 78.93 | 78.93 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 76.1 | 76.1 |
| Solyc01g111260.2.1 | Tomato | nucleus | 75.79 | 75.79 |
| KRH51412 | Soybean | cytosol | 75.16 | 75.39 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 74.53 | 74.53 |
| KRH24254 | Soybean | cytosol | 74.21 | 74.45 |
| PGSC0003DMT400059705 | Potato | cytosol | 72.96 | 72.96 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 73.58 | 72.45 |
| Solyc10g055240.1.1 | Tomato | cytosol | 72.01 | 72.01 |
| AT4G34920.1 | Thale cress | cytosol | 70.13 | 70.13 |
| KRH29259 | Soybean | plasma membrane | 54.09 | 67.98 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 66.35 | 66.14 |
| EER99259 | Sorghum | cytosol | 69.81 | 65.49 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 66.67 | 63.1 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 66.98 | 63.02 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 66.67 | 62.72 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 61.64 | 60.68 |
| TraesCS5B01G328000.1 | Wheat | plastid | 61.01 | 60.06 |
| TraesCS5D01G333900.1 | Wheat | plastid | 60.38 | 59.44 |
| HORVU5Hr1G083100.1 | Barley | plastid | 59.75 | 58.82 |
| PGSC0003DMT400059701 | Potato | cytosol | 38.05 | 57.89 |
| HORVU5Hr1G045890.1 | Barley | plastid | 55.97 | 53.61 |
| AT4G34930.1 | Thale cress | plastid | 62.89 | 51.15 |
| HORVU5Hr1G082990.1 | Barley | plastid | 28.3 | 23.62 |
Protein Annotations
| Gene3D:3.20.20.190 | MapMan:35.2 | EntrezGene:830025 | UniProt:A0A178UXV4 | ProteinID:AEE86965.1 | ArrayExpress:AT4G38690 |
| EnsemblPlantsGene:AT4G38690 | RefSeq:AT4G38690 | TAIR:AT4G38690 | RefSeq:AT4G38690-TAIR-G | EnsemblPlants:AT4G38690.1 | TAIR:AT4G38690.1 |
| EMBL:AY070465 | EMBL:AY091668 | ProteinID:CAB37525.1 | ProteinID:CAB80533.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 |
| InterPro:IPR017946 | RefSeq:NP_195581.1 | ProteinID:OAO97501.1 | PFAM:PF00388 | InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50007 |
| PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | UniProt:Q9SZP6 | SMART:SM00148 | SUPFAM:SSF51695 | UniParc:UPI0000048A94 |
Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
Coordinates
chr4:-:18074320..18075957
Molecular Weight (calculated)
36291.7 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.409
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.