Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G333500.1 | Wheat | cytosol | 96.75 | 97.32 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 96.45 | 96.45 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 76.92 | 81.5 |
| EER99259 | Sorghum | cytosol | 78.7 | 78.47 |
| TraesCS5B01G328000.1 | Wheat | plastid | 73.37 | 76.78 |
| Bra010731.1-P | Field mustard | cytosol | 64.79 | 68.87 |
| CDX90289 | Canola | cytosol | 64.79 | 68.87 |
| KRH51412 | Soybean | cytosol | 64.2 | 68.45 |
| CDY12097 | Canola | plasma membrane | 64.2 | 68.24 |
| AT4G38690.1 | Thale cress | cytosol | 62.72 | 66.67 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 61.24 | 65.09 |
| KRH24254 | Soybean | cytosol | 60.35 | 64.35 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 60.35 | 64.15 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 60.06 | 63.84 |
| PGSC0003DMT400059705 | Potato | cytosol | 59.47 | 63.21 |
| Solyc01g111260.2.1 | Tomato | nucleus | 59.47 | 63.21 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 59.76 | 62.54 |
| KRH29259 | Soybean | plasma membrane | 46.45 | 62.06 |
| Solyc10g055240.1.1 | Tomato | cytosol | 57.69 | 61.32 |
| AT4G34920.1 | Thale cress | cytosol | 56.8 | 60.38 |
| CDY58810 | Canola | peroxisome | 55.62 | 58.93 |
| CDY17493 | Canola | peroxisome | 55.03 | 58.49 |
| Bra034663.1-P | Field mustard | cytosol | 54.73 | 58.18 |
| PGSC0003DMT400059701 | Potato | cytosol | 30.47 | 49.28 |
| AT4G34930.1 | Thale cress | plastid | 54.44 | 47.06 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 53.85 | 46.91 |
| CDY58809 | Canola | peroxisome | 53.55 | 46.65 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 53.85 | 42.23 |
| Bra034664.1-P | Field mustard | cytosol | 45.86 | 41.67 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 53.85 | 40.9 |
| HORVU5Hr1G082990.1 | Barley | plastid | 44.08 | 39.11 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G327500.1 | EnsemblPlantsGene:TraesCS5B01G327500 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | PFAM:PF00388 | PFscan:PS50007 |
| SEG:seg | SMART:SM00148 | SUPFAM:SSF51695 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5B:-:511361061..511362077
Molecular Weight (calculated)
37787.0 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.352
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSPSNSN DSGKKNPLDA MGAFFSAQVN RRKLVSTQKL AMSERCTSCG DEFPGCAHRP ADRKTWMAEL GPDRLRVHQV VWPGTHDSAT NKIGIPFITR
101: PFAQCQSLSV YHQLALGCRL LDVRVQEERR VCHGVLATYS VDVVLDDVLR FLAETVSEVL VLEIRTEFGR EDPPDFAKYL VERLGEHLIP QDEAVFGKTV
201: AELLPRRVIC VWKPRKSPAP GRGEPLWSSG YLRDNWIDTD LPETKYDSNL KFLGQQPPAR DRRYLYRVEN TVTPQADNPV VCVRPVTNRI RGYARSFIAE
301: AFAKGLGDRL QVFSTDFIDG DFVDACAGVT KARVDGAA
101: PFAQCQSLSV YHQLALGCRL LDVRVQEERR VCHGVLATYS VDVVLDDVLR FLAETVSEVL VLEIRTEFGR EDPPDFAKYL VERLGEHLIP QDEAVFGKTV
201: AELLPRRVIC VWKPRKSPAP GRGEPLWSSG YLRDNWIDTD LPETKYDSNL KFLGQQPPAR DRRYLYRVEN TVTPQADNPV VCVRPVTNRI RGYARSFIAE
301: AFAKGLGDRL QVFSTDFIDG DFVDACAGVT KARVDGAA
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.