Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 89.78 | 91.19 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 86.07 | 87.42 |
| PGSC0003DMT400059705 | Potato | cytosol | 79.57 | 80.82 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 75.85 | 77.04 |
| KRH24254 | Soybean | cytosol | 73.37 | 74.76 |
| KRH51412 | Soybean | cytosol | 73.06 | 74.45 |
| AT4G38690.1 | Thale cress | cytosol | 72.45 | 73.58 |
| Bra010731.1-P | Field mustard | cytosol | 71.83 | 72.96 |
| CDX90289 | Canola | cytosol | 71.83 | 72.96 |
| CDY12097 | Canola | plasma membrane | 71.52 | 72.64 |
| AT4G34920.1 | Thale cress | cytosol | 68.42 | 69.5 |
| KRH29259 | Soybean | plasma membrane | 53.87 | 68.77 |
| CDY58810 | Canola | peroxisome | 66.25 | 67.08 |
| CDY17493 | Canola | peroxisome | 65.94 | 66.98 |
| Bra034663.1-P | Field mustard | cytosol | 65.63 | 66.67 |
| EER99259 | Sorghum | cytosol | 65.33 | 62.24 |
| PGSC0003DMT400059701 | Potato | cytosol | 39.94 | 61.72 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 60.37 | 61.13 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 63.78 | 60.95 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 63.16 | 60.71 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 62.54 | 59.76 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 58.51 | 58.51 |
| HORVU5Hr1G083100.1 | Barley | plastid | 58.51 | 58.51 |
| TraesCS5B01G328000.1 | Wheat | plastid | 58.51 | 58.51 |
| TraesCS5D01G333900.1 | Wheat | plastid | 58.2 | 58.2 |
| HORVU5Hr1G045890.1 | Barley | plastid | 54.8 | 53.31 |
| AT4G34930.1 | Thale cress | plastid | 64.4 | 53.2 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 62.23 | 51.8 |
| CDY58809 | Canola | peroxisome | 61.92 | 51.55 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 62.23 | 46.64 |
| Bra034664.1-P | Field mustard | cytosol | 53.25 | 46.24 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 62.23 | 45.17 |
| HORVU5Hr1G082990.1 | Barley | plastid | 26.93 | 22.83 |
Protein Annotations
| EntrezGene:102588952 | Gene3D:3.20.20.190 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| UniProt:M0ZMW4 | PFAM:PF00388 | EnsemblPlantsGene:PGSC0003DMG400001622 | PGSC:PGSC0003DMG400001622 | EnsemblPlants:PGSC0003DMT400004107 | InterPro:PLC-like_Pdiesterase_TIM-brl |
| InterPro:PLipase_C_PInositol-sp_X_dom | PFscan:PS50007 | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | SMART:SM00148 | SUPFAM:SSF51695 |
| UniParc:UPI000296E72C | RefSeq:XP_006359666.1 | : | : | : | : |
Description
Phospholipase C [Source:PGSC_GENE;Acc:PGSC0003DMG400001622]
Coordinates
chr1:+:87259677..87260942
Molecular Weight (calculated)
37299.3 Da
IEP (calculated)
7.984
GRAVY (calculated)
-0.522
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFFSKQVQ RRKSIHTQKK LLYDLKEKNN TDFPGSDYHS DDRKNWMSTL VLEKLNINKI IWPGTHDSAT NKIGIPFISR PFARTQSLSI YKQLVMGTRV
101: LDIRVQEDGR VCHGILVSYH ADVVINDVKK FLSETQSEII ILEIRTEFGH DDPPEFDKYL EDQLGEFLIH QDDSVFNKTV AELLPKRVIC VWKPRKSPQP
201: KHGSSLWSAG YLKDNWIDTD LPETKFESNL KYLSEQPSVT SRKYFYRVEN TVTPQADNPV LCVKPVTNRI RPYGRLFINE SISRGYGDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGNVTL STR
101: LDIRVQEDGR VCHGILVSYH ADVVINDVKK FLSETQSEII ILEIRTEFGH DDPPEFDKYL EDQLGEFLIH QDDSVFNKTV AELLPKRVIC VWKPRKSPQP
201: KHGSSLWSAG YLKDNWIDTD LPETKFESNL KYLSEQPSVT SRKYFYRVEN TVTPQADNPV LCVKPVTNRI RPYGRLFINE SISRGYGDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGNVTL STR
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.