CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90289	Canola	cytosol	99.06	99.06
AT4G38690.1	Thale cress	cytosol	94.34	94.34
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	78.3	78.3
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	75.47	75.47
KRH51412	Soybean	cytosol	74.84	75.08
Solyc01g111260.2.1	Tomato	nucleus	74.84	74.84
KRH24254	Soybean	cytosol	74.21	74.45
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	73.27	73.27
PGSC0003DMT400059705	Potato	cytosol	72.01	72.01
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	72.64	71.52
Solyc10g055240.1.1	Tomato	cytosol	71.07	71.07
KRH29259	Soybean	plasma membrane	54.09	67.98
CDY58810	Canola	peroxisome	67.61	67.4
CDY17493	Canola	peroxisome	66.98	66.98
Zm00001d006231_P001	Maize	cytosol, mitochondrion	66.98	66.77
EER99259	Sorghum	cytosol	70.75	66.37
TraesCS5D01G333500.1	Wheat	cytosol	68.24	64.58
TraesCS5B01G327500.1	Wheat	cytosol	68.24	64.2
TraesCS5A01G327600.1	Wheat	cytosol	67.92	63.91
TraesCS5A01G328000.1	Wheat	cytosol	62.58	61.61
TraesCS5B01G328000.1	Wheat	plastid	62.58	61.61
TraesCS5D01G333900.1	Wheat	plastid	61.64	60.68
HORVU5Hr1G083100.1	Barley	plastid	61.01	60.06
PGSC0003DMT400059701	Potato	cytosol	37.42	56.94
HORVU5Hr1G045890.1	Barley	plastid	57.55	55.12
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	60.38	49.48
CDY58809	Canola	peroxisome	60.06	49.23
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	60.38	44.55
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	60.38	43.15
HORVU5Hr1G082990.1	Barley	plastid	28.93	24.15

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.2	GO:A0A078FGL2	UniProt:A0A078FGL2	EnsemblPlants:CDY12097	ProteinID:CDY12097
ProteinID:CDY12097.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00061068001	InterPro:IPR000909	InterPro:IPR017946	PFAM:PF00388
InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	SMART:SM00148
SUPFAM:SSF51695	UniParc:UPI0004EE2C62	:	:	:	:

Description

BnaC03g60130DBnaC03g60130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGL2]

Coordinates

chrLK032017:-:464433..465558

Molecular Weight (calculated)

36110.3 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.390

Length

318 amino acids

Sequence
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALADLQQSCG CEFPGCDYTP SDRKTWMAGV GPDKLHINKI VWPGTHDSAT NKIGIRFVSR PFAQCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLTDLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGDHLIH QDDGVFGKTV AELLPKRVIC VWKPRKSPQP
201: KRGDPLWSAG YLKDNWIDTD LPSTKFESNL KHLSQQQPAA SRKFFYRVEN TVTPQPDNPI LCVKPVTNRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDK
301: EFVDACVSLT FARAEGKA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.