CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62667	Canola	nucleus	82.66	88.89
CDX77598	Canola	nucleus	40.22	88.62
CDY11716	Canola	nucleus	92.99	87.5
CDX98195	Canola	nucleus	69.0	60.71
AT4G00270.1	Thale cress	nucleus	45.76	41.06
AT2G25650.1	Thale cress	nucleus	47.97	33.68
CDY38562	Canola	nucleus	35.79	32.12
CDY70351	Canola	cytosol	18.82	31.88
CDY26991	Canola	nucleus	34.69	31.23
CDY11715	Canola	cytosol	17.34	29.56
CDX98194	Canola	cytosol	14.39	26.17
CDY72668	Canola	cytosol, nucleus	17.34	16.61
CDY43727	Canola	cytosol	17.34	14.92

Protein Annotations

EnsemblPlants:CDY70352	EnsemblPlantsGene:GSBRNA2T00098213001	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	PANTHER:PTHR31662	PANTHER:PTHR31662:SF1	PFAM:PF04504
ProteinID:CDY70352	ProteinID:CDY70352.1	SEG:seg	UniParc:UPI0004EE4AEB	UniProt:A0A078JXK0	MapMan:15.5.28

Description

BnaCnng67960DBnaCnng67960D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXK0]

Coordinates

chrLK041852:-:1491..2624

Molecular Weight (calculated)

30730.5 Da

IEP (calculated)

10.101

GRAVY (calculated)

-0.840

Length

271 amino acids

Sequence
(BLAST)

001: LFLSLESPNS NLEEKKIRAS LHVRMVNLDF PDGTSPPSHI LRSRKSPRKY ASKPSPPEPA TEHVTKKKKK KKTLASSSSR IWNEEDELTV LKGLVEYQAQ
101: KGNEPKSNWA DFYRFLGGSI TGKFSKEQVL TKIRKLKAKF IVSMQKGNAS KSEAFLLSKS IWGLQDESDQ SANNTKSGEE MANHEPSNNE VTKADFEGND
201: ESWAVRDAFE TMVSKGLSDY QKKLQLEKLM NLGPGKRREL SDEWKELCAE EVKLNIKRFK FSAMLAEAAK W

Best Arabidopsis Sequence Match ( AT4G00270.1 )
(BLAST)

001: MVTPKQIDFS SCVGADNSNG TLSHRRSPRN IPSSKRAASV AEEETMKKKM KMKKKKKKLD PPLIVRIWNE EDELSILKGL VDYRAKTGFN PKIDWDAFCS
101: FLGSSIVERF SKDQVLSKIR KLKRRFHVHS EKINQGNDPK FTRSSDSEAF GFSSMIWGQG DDDGMDKEHE VNGNGAAENR TNESGEEMLK EHEEEVANTE
201: LLNENGAAKT TENGTSSGKE RHDEDNDDDD ELCAVQDAFE AVMSQGLSGY QKKLQLEKLM NLGNGKRREL SDEWKALCVE ETRFNIKKLR FSAKLAEAAN
301: DS

Arabidopsis Description

GEBPGLABROUS1 enhancer-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.