Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70351 | Canola | cytosol | 92.45 | 91.88 |
| CDX98194 | Canola | cytosol | 49.69 | 53.02 |
| CDX77598 | Canola | nucleus | 16.35 | 21.14 |
| CDY72668 | Canola | cytosol, nucleus | 35.22 | 19.79 |
| CDY26991 | Canola | nucleus | 36.48 | 19.27 |
| CDY62667 | Canola | nucleus | 28.93 | 18.25 |
| CDY38562 | Canola | nucleus | 34.59 | 18.21 |
| CDY43727 | Canola | cytosol | 35.22 | 17.78 |
| CDY70352 | Canola | nucleus | 29.56 | 17.34 |
| AT2G36340.1 | Thale cress | cytosol | 43.4 | 16.67 |
| CDY11716 | Canola | nucleus | 28.93 | 15.97 |
| CDX98195 | Canola | nucleus | 27.67 | 14.29 |
Protein Annotations
| EnsemblPlants:CDY11715 | EnsemblPlantsGene:GSBRNA2T00049914001 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | ProteinID:CDY11715 | ProteinID:CDY11715.1 |
| UniParc:UPI0004EDF96F | UniProt:A0A078FBE3 | MapMan:15.5.28 | : | : | : |
Description
BnaC06g13230DBnaC06g13230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBE3]
Coordinates
chrLK032013:-:704005..704789
Molecular Weight (calculated)
18829.8 Da
IEP (calculated)
9.264
GRAVY (calculated)
-0.721
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRRRKQQKK YLLWNINDVL LILKGIVEYE NERGFRYNSD WDIFYGYTKD LINIRFSKKQ LMEEDVPLVE QKRVNDTRMD KDKSEELGGM DEFDALQDAL
101: EASTSFQSVG KTKQKMLFQD LKTLGAQRRK ELAGEWKALL NEEMELHMKK LTLLTKASL
101: EASTSFQSVG KTKQKMLFQD LKTLGAQRRK ELAGEWKALL NEEMELHMKK LTLLTKASL
001: MLFYLYVTRC KQLLNYNNME TDNGDKEKSE EDDLCALKDA LEAVILFQGL SEYQKKLMFP NLKNLGAETI KELIDEWKEL NVEELNLNIK KQTFFTKFAN
101: ASWSLMLLIQ QENNFCFWMF YVIPTSLFFV CCVLLHLLND GS
101: ASWSLMLLIQ QENNFCFWMF YVIPTSLFFV CCVLLHLLND GS
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FFS7]
SUBAcon: [mitochondrion,plastid,extracellular,cytosol]
SUBAcon: [mitochondrion,plastid,extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.