Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38562 | Canola | nucleus | 91.03 | 90.73 |
| CDX77598 | Canola | nucleus | 19.27 | 47.15 |
| AT5G14280.1 | Thale cress | nucleus | 42.52 | 42.52 |
| CDY62667 | Canola | nucleus | 32.56 | 38.89 |
| CDY70351 | Canola | cytosol | 20.27 | 38.12 |
| CDY11715 | Canola | cytosol | 19.27 | 36.48 |
| CDY70352 | Canola | nucleus | 31.23 | 34.69 |
| CDY11716 | Canola | nucleus | 30.56 | 31.94 |
| CDX98194 | Canola | cytosol | 15.61 | 31.54 |
| CDX98195 | Canola | nucleus | 29.57 | 28.9 |
| CDY72668 | Canola | cytosol, nucleus | 20.6 | 21.91 |
| CDY43727 | Canola | cytosol | 19.93 | 19.05 |
Protein Annotations
| EnsemblPlants:CDY26991 | EnsemblPlantsGene:GSBRNA2T00036772001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY26991 | ProteinID:CDY26991.1 | SEG:seg | UniParc:UPI0004EC0FE0 | UniProt:A0A078GNW2 | MapMan:15.5.28 |
Description
BnaC06g12070DBnaC06g12070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNW2]
Coordinates
chrLK032198:-:86034..87398
Molecular Weight (calculated)
34157.9 Da
IEP (calculated)
4.767
GRAVY (calculated)
-0.864
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLKRLNFS DTCLQKSPSE EVSTKKKKLA SPVIKRIWNE DDELSILKGL VEYRVKTRHD PSFDWDGFFC FVQGSIHVRF SKEQLFSKVR KLRRKFVLHM
101: ERIDRGEDPL FTRLTDSQAF GYSNMIWGLN QGEVAANGGG TEKAPGDTQE DEPLDNAGRV NDNGDESSKL DGKDSEFADG GMENVMQIES DENASREKGR
201: VSNDEPVNEN GAEKGELDGK ESHDDDDDEL RVVEDAFETT ILQGLSDWQR NLQLKKLMMN LGTEKRKELS NEWKALCSEE VKLKIKKLRF TVKLVEAAND
301: G
101: ERIDRGEDPL FTRLTDSQAF GYSNMIWGLN QGEVAANGGG TEKAPGDTQE DEPLDNAGRV NDNGDESSKL DGKDSEFADG GMENVMQIES DENASREKGR
201: VSNDEPVNEN GAEKGELDGK ESHDDDDDEL RVVEDAFETT ILQGLSDWQR NLQLKKLMMN LGTEKRKELS NEWKALCSEE VKLKIKKLRF TVKLVEAAND
301: G
001: MVTPKQIDFS SCGGGDNSDD TLSHRESPRN PSSKRAAASF AAEAGEETMK KKKKKKKKNL GPPLIVRIWN EEDELSILKG LVDYRAKTGF NPKIDWDAFY
101: SFLGSSIVAK FSKEQVLSKI RKLKRRFHVH WEKISEGNDP KFTRSSDSEA FGFSSMIWGQ GEFGNDDGMD KEMVKEHDVN GNGAAENGTA RIAQENESGE
201: EMLKEHEETL NENGAEEIRD NDETARKAQQ LESESEEEML KEHEEPFNEN GAENIRDNNG TTQIAQQSES ESEEMLKEHE EVANTELVNE NGAAKTTENG
301: TTGGKERHDD DDDDELCAVQ DAFEAVMSQG LSGYQKKLQL EKLMNLGTGK RRELSDEWKA LCVEERRLNI KKLRFSAKLA EAANDS
101: SFLGSSIVAK FSKEQVLSKI RKLKRRFHVH WEKISEGNDP KFTRSSDSEA FGFSSMIWGQ GEFGNDDGMD KEMVKEHDVN GNGAAENGTA RIAQENESGE
201: EMLKEHEETL NENGAEEIRD NDETARKAQQ LESESEEEML KEHEEPFNEN GAENIRDNNG TTQIAQQSES ESEEMLKEHE EVANTELVNE NGAAKTTENG
301: TTGGKERHDD DDDDELCAVQ DAFEAVMSQG LSGYQKKLQL EKLMNLGTGK RRELSDEWKA LCVEERRLNI KKLRFSAKLA EAANDS
Arabidopsis Description
GPL1GLABROUS1 enhancer-binding protein-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.