CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77598	Canola	nucleus	41.67	85.37
CDY70352	Canola	nucleus	88.89	82.66
CDY11716	Canola	nucleus	88.1	77.08
CDX98195	Canola	nucleus	72.62	59.42
AT4G00270.1	Thale cress	nucleus	48.41	40.4
CDY38562	Canola	nucleus	40.48	33.77
AT2G25650.1	Thale cress	nucleus	50.79	33.16
CDY26991	Canola	nucleus	38.89	32.56
CDY70351	Canola	cytosol	19.84	31.25
CDY11715	Canola	cytosol	18.25	28.93
CDX98194	Canola	cytosol	14.68	24.83
CDY72668	Canola	cytosol, nucleus	19.05	16.96
CDY43727	Canola	cytosol	19.05	15.24

Protein Annotations

EnsemblPlants:CDY62667	EnsemblPlantsGene:GSBRNA2T00037476001	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	PANTHER:PTHR31662	PANTHER:PTHR31662:SF1	PFAM:PF04504
ProteinID:CDY62667	ProteinID:CDY62667.1	SEG:seg	SUPFAM:SSF101447	UniParc:UPI0004EF095F	UniProt:A0A078J7J1
MapMan:15.5.28	:	:	:	:	:

Description

BnaCnng40730DBnaCnng40730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7J1]

Coordinates

chrLK034177:+:4559..5593

Molecular Weight (calculated)

28381.6 Da

IEP (calculated)

10.077

GRAVY (calculated)

-0.972

Length

252 amino acids

Sequence
(BLAST)

001: MNLDFPDGTS PPSHIPRSRK SPRKNASKPS PPPPPPPPEP ATEHVTNKKK KKKKALASSS RIWNEEDELT VLKGLVEYQA QKGNEPKSNW GDFYRFVGGS
101: ITGKFSKEQV LTKIRKLKAK FIANMQKANT SKSEAFLLSK SIWGPQSESD QSADHTKSGE EMANHEPSNN EVTKADFEGN EESWVVRDAF ETMVSKGLSD
201: YQKKLQLEKL MNLGSGKRRE LSDEWKELCA EEVKLNIKKF KFSAMLAEAA KW

Best Arabidopsis Sequence Match ( AT4G00270.1 )
(BLAST)

001: MVTPKQIDFS SCVGADNSNG TLSHRRSPRN IPSSKRAASV AEEETMKKKM KMKKKKKKLD PPLIVRIWNE EDELSILKGL VDYRAKTGFN PKIDWDAFCS
101: FLGSSIVERF SKDQVLSKIR KLKRRFHVHS EKINQGNDPK FTRSSDSEAF GFSSMIWGQG DDDGMDKEHE VNGNGAAENR TNESGEEMLK EHEEEVANTE
201: LLNENGAAKT TENGTSSGKE RHDEDNDDDD ELCAVQDAFE AVMSQGLSGY QKKLQLEKLM NLGNGKRREL SDEWKALCVE ETRFNIKKLR FSAKLAEAAN
301: DS

Arabidopsis Description

GEBPGLABROUS1 enhancer-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.