Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039500.1-P | Field mustard | nucleus | 97.35 | 98.0 |
| CDY26991 | Canola | nucleus | 90.73 | 91.03 |
| CDX77598 | Canola | nucleus | 19.87 | 48.78 |
| AT5G14280.1 | Thale cress | nucleus | 42.05 | 42.19 |
| CDY62667 | Canola | nucleus | 33.77 | 40.48 |
| CDY70351 | Canola | cytosol | 19.54 | 36.88 |
| CDY70352 | Canola | nucleus | 32.12 | 35.79 |
| CDY11715 | Canola | cytosol | 18.21 | 34.59 |
| CDY11716 | Canola | nucleus | 31.46 | 32.99 |
| CDX98195 | Canola | nucleus | 31.46 | 30.84 |
| CDX98194 | Canola | cytosol | 14.9 | 30.2 |
| CDY72668 | Canola | cytosol, nucleus | 21.52 | 22.97 |
| CDY43727 | Canola | cytosol | 20.86 | 20.0 |
Protein Annotations
| EnsemblPlants:CDY38562 | EnsemblPlantsGene:GSBRNA2T00066232001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY38562 | ProteinID:CDY38562.1 | SEG:seg | UniParc:UPI0004EE108E | UniProt:A0A078HL29 | MapMan:15.5.28 |
Description
BnaA05g12910DBnaA05g12910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL29]
Coordinates
chrLK032426:-:200464..201868
Molecular Weight (calculated)
34319.3 Da
IEP (calculated)
5.234
GRAVY (calculated)
-0.845
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGLNFSDTS LQNSPSEEVS TKKNKNKNKK KKLASPVIKR IWNEDDELSI LKGLVEYRVK TRHDPSFDWD GFFCFVQGSV HVRFSKEQLF SKVRKLRRKF
101: VLHMERIDRG EDPLFTRLTD SQAFGYSNMI WGLNQAEVAA NAGGTEKAPG DTQEDEHLDN AGHVNYNGVE SSKLDGKESE FANGGMESVM QIESDENGFR
201: ENGRVSNDEP VNENGAEKGE LDGKETDDDE LRVVEDAFET TILQGLSDWQ MKLQLKKLMM NLGTEKRKEL SNEWKALCSE EVKLKIKKLR FTVKLVEAAN
301: DG
101: VLHMERIDRG EDPLFTRLTD SQAFGYSNMI WGLNQAEVAA NAGGTEKAPG DTQEDEHLDN AGHVNYNGVE SSKLDGKESE FANGGMESVM QIESDENGFR
201: ENGRVSNDEP VNENGAEKGE LDGKETDDDE LRVVEDAFET TILQGLSDWQ MKLQLKKLMM NLGTEKRKEL SNEWKALCSE EVKLKIKKLR FTVKLVEAAN
301: DG
001: MVTPKQIDFS SCGGGDNSDD TLSHRESPRN PSSKRAAASF AAEAGEETMK KKKKKKKKNL GPPLIVRIWN EEDELSILKG LVDYRAKTGF NPKIDWDAFY
101: SFLGSSIVAK FSKEQVLSKI RKLKRRFHVH WEKISEGNDP KFTRSSDSEA FGFSSMIWGQ GEFGNDDGMD KEMVKEHDVN GNGAAENGTA RIAQENESGE
201: EMLKEHEETL NENGAEEIRD NDETARKAQQ LESESEEEML KEHEEPFNEN GAENIRDNNG TTQIAQQSES ESEEMLKEHE EVANTELVNE NGAAKTTENG
301: TTGGKERHDD DDDDELCAVQ DAFEAVMSQG LSGYQKKLQL EKLMNLGTGK RRELSDEWKA LCVEERRLNI KKLRFSAKLA EAANDS
101: SFLGSSIVAK FSKEQVLSKI RKLKRRFHVH WEKISEGNDP KFTRSSDSEA FGFSSMIWGQ GEFGNDDGMD KEMVKEHDVN GNGAAENGTA RIAQENESGE
201: EMLKEHEETL NENGAEEIRD NDETARKAQQ LESESEEEML KEHEEPFNEN GAENIRDNNG TTQIAQQSES ESEEMLKEHE EVANTELVNE NGAAKTTENG
301: TTGGKERHDD DDDDELCAVQ DAFEAVMSQG LSGYQKKLQL EKLMNLGTGK RRELSDEWKA LCVEERRLNI KKLRFSAKLA EAANDS
Arabidopsis Description
GPL1GLABROUS1 enhancer-binding protein-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.