Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43727 | Canola | cytosol | 90.46 | 81.27 |
| Bra017244.1-P | Field mustard | nucleus | 49.82 | 37.4 |
| CDY11715 | Canola | cytosol | 19.79 | 35.22 |
| CDY70351 | Canola | cytosol | 19.79 | 35.0 |
| CDX98194 | Canola | cytosol | 16.96 | 32.21 |
| CDX77598 | Canola | nucleus | 13.43 | 30.89 |
| CDY38562 | Canola | nucleus | 22.97 | 21.52 |
| CDY26991 | Canola | nucleus | 21.91 | 20.6 |
| CDY62667 | Canola | nucleus | 16.96 | 19.05 |
| CDY70352 | Canola | nucleus | 16.61 | 17.34 |
| CDY11716 | Canola | nucleus | 16.25 | 15.97 |
| CDX98195 | Canola | nucleus | 16.25 | 14.94 |
Protein Annotations
| EnsemblPlants:CDY72668 | EnsemblPlantsGene:GSBRNA2T00034415001 | ncoils:Coil | ProteinID:CDY72668 | ProteinID:CDY72668.1 | SEG:seg |
| UniParc:UPI0004EEC989 | UniProt:A0A078JYB5 | MapMan:35.2 | : | : | : |
Description
BnaAnng41960DBnaAnng41960D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYB5]
Coordinates
chrLK052575:-:301..1984
Molecular Weight (calculated)
32013.8 Da
IEP (calculated)
4.004
GRAVY (calculated)
-0.949
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: DAPCVEHEKV SESNMDQAKD VPCVEHERVD ENIEQAKDAS LVEHERVDEN MEQEKDVPCV EHEPVDENMD QAKVDLPCVE DERVDKNVDQ AKVVLDLDKD
101: APCVEHEPTN ENMDLDQEKD VPCVEHELVN ENMDPEEVEM AVPCAEDGPL SNVSIETDKG EKEKSEEEFV AMKDALTDKD NNEEDGVNEF CAMKDALADK
201: EKSEEDSADE YCALKDALEA TTFFQSIGKY QQKALLQNLK NLRGPRRKEL ADELKELLDE EMKVRGKKLS LSAKLASAWE ESC
101: APCVEHEPTN ENMDLDQEKD VPCVEHELVN ENMDPEEVEM AVPCAEDGPL SNVSIETDKG EKEKSEEEFV AMKDALTDKD NNEEDGVNEF CAMKDALADK
201: EKSEEDSADE YCALKDALEA TTFFQSIGKY QQKALLQNLK NLRGPRRKEL ADELKELLDE EMKVRGKKLS LSAKLASAWE ESC
001: MVGTKRVADS IDTNSDDTLT RNREVEVEAM LSRRKQLRTT TTRTTTTRTT PLSLSSSASK MNWSKNDELV ILGGIVDYEN ETKLSYRSDW DALYRYIKDC
101: VEAKFSKIQL INKVKNMKRK FTYNQGRSNH GEQLSFTNTD DDEIFKLSLI IWDKNESEYV SNENIDQAKD VPSGEPETND VPCEEQDDRD VPCEEQERAN
201: IEIDNGVREK LDQAKDVPCV EQESEDVPCV EQERVSIEID NGEKEKLDQT MDCEEQENTD VLCEEKGDKD VPCEEQENKD VPCEEQERVS IEIDNGEEEM
301: SSEEDGVDEV GVMEDTLDSG ISFQGLGKNG VKDKSEEDDV VELGVLQEIF KEDTFFQSLG RYQQKLLLQN LENVGVERRK ELINEWKALF VDEQRLCVKK
401: LTFAAKLANL GVSP
101: VEAKFSKIQL INKVKNMKRK FTYNQGRSNH GEQLSFTNTD DDEIFKLSLI IWDKNESEYV SNENIDQAKD VPSGEPETND VPCEEQDDRD VPCEEQERAN
201: IEIDNGVREK LDQAKDVPCV EQESEDVPCV EQERVSIEID NGEKEKLDQT MDCEEQENTD VLCEEKGDKD VPCEEQENKD VPCEEQERVS IEIDNGEEEM
301: SSEEDGVDEV GVMEDTLDSG ISFQGLGKNG VKDKSEEDDV VELGVLQEIF KEDTFFQSLG RYQQKLLLQN LENVGVERRK ELINEWKALF VDEQRLCVKK
401: LTFAAKLANL GVSP
Arabidopsis Description
GPL3GLABROUS1 enhancer-binding protein-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.