Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70352 | Canola | nucleus | 87.5 | 92.99 |
| CDY62667 | Canola | nucleus | 77.08 | 88.1 |
| CDX77598 | Canola | nucleus | 37.15 | 86.99 |
| CDX98195 | Canola | nucleus | 65.97 | 61.69 |
| AT4G00270.1 | Thale cress | nucleus | 42.36 | 40.4 |
| AT2G25650.1 | Thale cress | nucleus | 44.79 | 33.42 |
| CDY38562 | Canola | nucleus | 32.99 | 31.46 |
| CDY70351 | Canola | cytosol | 17.36 | 31.25 |
| CDY26991 | Canola | nucleus | 31.94 | 30.56 |
| CDY11715 | Canola | cytosol | 15.97 | 28.93 |
| CDX98194 | Canola | cytosol | 13.19 | 25.5 |
| CDY72668 | Canola | cytosol, nucleus | 15.97 | 16.25 |
| CDY43727 | Canola | cytosol | 15.97 | 14.6 |
Protein Annotations
| EnsemblPlants:CDY11716 | EnsemblPlantsGene:GSBRNA2T00049915001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY11716 | ProteinID:CDY11716.1 | SEG:seg | UniParc:UPI0004EF4D57 | UniProt:A0A078FEM3 | MapMan:15.5.28 |
Description
BnaC06g13240DBnaC06g13240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEM3]
Coordinates
chrLK032013:-:705595..709030
Molecular Weight (calculated)
32803.2 Da
IEP (calculated)
10.352
GRAVY (calculated)
-0.806
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MTREREMSMK LLYGFFLSLE PPNANLDEKK IRAYLHVRIA TMVNLDFPDG TSPPSHFLRS RKSPRKNASK HSPPPEPATE HVTKKKKKKK TLASSSRIWN
101: EEDELTVLKG LVDYQAQKGN EPKSNWADFY RFLGGSITGK FSKEQVLTKI RKLKAKFIAS MQKGNTSKSE AFLLSKRIWG LQNVSDQSAN HTKSGEEMAN
201: HEPSNNEVTK ADFEGNDESW AVRDAFETMV SKGLSDYQKK LQLGKLMNLG SGKRRELSDE WKELCAEEVK LNIKRFKFSA VLAEAAKW
101: EEDELTVLKG LVDYQAQKGN EPKSNWADFY RFLGGSITGK FSKEQVLTKI RKLKAKFIAS MQKGNTSKSE AFLLSKRIWG LQNVSDQSAN HTKSGEEMAN
201: HEPSNNEVTK ADFEGNDESW AVRDAFETMV SKGLSDYQKK LQLGKLMNLG SGKRRELSDE WKELCAEEVK LNIKRFKFSA VLAEAAKW
001: MVTPKQIDFS SCVGADNSNG TLSHRRSPRN IPSSKRAASV AEEETMKKKM KMKKKKKKLD PPLIVRIWNE EDELSILKGL VDYRAKTGFN PKIDWDAFCS
101: FLGSSIVERF SKDQVLSKIR KLKRRFHVHS EKINQGNDPK FTRSSDSEAF GFSSMIWGQG DDDGMDKEHE VNGNGAAENR TNESGEEMLK EHEEEVANTE
201: LLNENGAAKT TENGTSSGKE RHDEDNDDDD ELCAVQDAFE AVMSQGLSGY QKKLQLEKLM NLGNGKRREL SDEWKALCVE ETRFNIKKLR FSAKLAEAAN
301: DS
101: FLGSSIVERF SKDQVLSKIR KLKRRFHVHS EKINQGNDPK FTRSSDSEAF GFSSMIWGQG DDDGMDKEHE VNGNGAAENR TNESGEEMLK EHEEEVANTE
201: LLNENGAAKT TENGTSSGKE RHDEDNDDDD ELCAVQDAFE AVMSQGLSGY QKKLQLEKLM NLGNGKRREL SDEWKALCVE ETRFNIKKLR FSAKLAEAAN
301: DS
Arabidopsis Description
GEBPGLABROUS1 enhancer-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.