CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037606_P001	Maize	cytosol	98.68	99.05
Os05t0155601-00	Rice	nucleus	90.57	89.89
Zm00001d009850_P002	Maize	cytosol	97.55	89.76
TraesCS1D01G106200.1	Wheat	cytosol	89.62	88.95
TraesCS1B01G126500.1	Wheat	cytosol	89.62	88.95
TraesCS1A01G097400.1	Wheat	nucleus	89.62	88.95
HORVU1Hr1G022750.2	Barley	plasma membrane	89.62	84.22
GSMUA_Achr3P24150_001	Banana	cytosol	81.89	81.89
GSMUA_Achr1P14770_001	Banana	cytosol	81.13	81.44
GSMUA_Achr8P06540_001	Banana	cytosol	81.51	81.36
VIT_14s0060g01510.t01	Wine grape	cytosol	80.57	81.02
KRH33847	Soybean	nucleus	80.57	80.26
KRG92948	Soybean	nucleus	80.57	80.26
KXG32187	Sorghum	cytosol	78.49	78.79
KRH68461	Soybean	nucleus	77.36	77.07
KRG96743	Soybean	nucleus	77.36	77.07
GSMUA_Achr5P27090_001	Banana	cytosol	78.11	75.96
KXG32452	Sorghum	cytosol	42.45	59.37
KXG36990	Sorghum	cytosol	47.55	44.76
EES02429	Sorghum	plastid	27.92	26.19

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	EntrezGene:8069539	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	UniProt:C5Z0J7	EnsemblPlants:EES19061	ProteinID:EES19061	ProteinID:EES19061.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737
GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989
InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514	PFAM:PF01749
PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF35
SMART:SM00185	EnsemblPlantsGene:SORBI_3009G050700	SUPFAM:SSF48371	unigene:Sbi.14872	UniParc:UPI0001A88CEE	RefSeq:XP_002440631.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:5036659..5041654

Molecular Weight (calculated)

58292.6 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.296

Length

530 amino acids

Sequence
(BLAST)

001: MSLRPSEREQ MRKGNYKQTV DAEESRRRRE GQMVDIRKAK REESLQKKRR DGFPASAAGA VPPMGHSTAL QQKLDGLPAM VQAVLSNDPT VQLDATTQFR
101: KLLSIERSPP IEEVISTGVV PRFIEFLTRE DHPQLQFEAA WALTNIASGT SENTKVVVES GAVPIFVKLL NSHSEDVREQ AVWALGNVAG DSPKCRDLVL
201: GHGGLFPLLQ QLNEHAKLSM LRNATWTLSN FCRGKPQPNF DQVKPALPAL QRLIHSQDEE VLTDACWALS YLSDGTNDKI QAVIESGVFP RLVELLMHPS
301: ASVLIPALRT VGNIVTGDDM QTQCVIDNQA LPCLLNLLTT NHKKSIKKEA CWTISNITAG NREQIQAVIN ANIIAPLVQL LQTAEFDIKK EAAWAISNAT
401: SGGTHDQIKY LVAQGCIKPL CDLLVCPDPR IVTVCLEGLE NILKVGEAEK NLGGGDVNVY AQMIDDAEGL DKIENLQSHD NTEIYEKAVK MLESYWLEEE
501: DDAMPSGDNP QNGFNFGNQP SVPSGGFNFG

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.