Factsheet for TraesCS1A01G097400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G126500.1	Wheat	cytosol	100.0	100.0
TraesCS1D01G106200.1	Wheat	cytosol	99.81	99.81
HORVU1Hr1G022750.2	Barley	plasma membrane	99.06	93.79
Os05t0155601-00	Rice	nucleus	91.95	91.95
Zm00001d037606_P001	Maize	cytosol	88.76	89.77
EES19061	Sorghum	cytosol	88.95	89.62
GSMUA_Achr3P24150_001	Banana	cytosol	82.58	83.21
GSMUA_Achr8P06540_001	Banana	cytosol	82.02	82.49
VIT_14s0060g01510.t01	Wine grape	cytosol	81.27	82.35
GSMUA_Achr1P14770_001	Banana	cytosol	80.9	81.82
KRH33847	Soybean	nucleus	81.09	81.39
KRG92948	Soybean	nucleus	81.09	81.39
Zm00001d009850_P002	Maize	cytosol	87.64	81.25
TraesCS3A01G172000.1	Wheat	golgi, nucleus	77.72	79.2
KRG96743	Soybean	nucleus	78.65	78.95
KRH68461	Soybean	nucleus	78.28	78.57
GSMUA_Achr5P27090_001	Banana	cytosol	79.59	77.98
TraesCS2A01G097100.1	Wheat	cytosol	47.38	44.94
TraesCS3A01G309900.2	Wheat	plastid	28.84	27.4

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:Importin-a_IBB	InterPro:Importing_su_alpha
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF35	SMART:SM00185	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS1A01G097400	EnsemblPlants:TraesCS1A01G097400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:93693869..93698186

Molecular Weight (calculated)

58622.7 Da

IEP (calculated)

4.893

GRAVY (calculated)

-0.286

Length

534 amino acids

Sequence
(BLAST)

001: MSLRPNERAE VRRSRYKASV DAEDGRRRRE DQMVEIRKNQ RDANLQKKRR DGFPAGAASA AGGAPQMGHS SALQQKLEGL PAMVQAVLSD DNAVQLEATT
101: QFRKLLSIER SPPIEEVINT GVVPRFIEFL TREDYPQLQF EAAWALTNIA SGTSDNTKVV VEYGAVPIFV KLLSSPSEDV REQAVWALGN VAGDSPKCRD
201: LVLGSGGLFP LLQQLNEHAK LSMLRNATWT LSNFCRGKPQ PNFEQVKPAL SALQRLIHSQ DEEVLTDACW ALSYLSDGTN DKIQSVIESG VFPRLVELLL
301: HPSASVLIPA LRTVGNIVTG DDLQTQCVID HQALPCLLNL LTTNHKKSIK KEACWTISNI TAGNRDQIQA VIQANIIGPL VHLLQGAEFD IKKEAAWAIS
401: NATSGGTHDQ IKYLVAQGCI KPLCDLLICP DPRIVTVCLE GLENILKVGE AEKNLGAGDV NNYAQMIDDA EGLEKIENLQ SHDNTEIYEK AVKMLESYWL
501: EEEDEVMPSG DNAQNGFNFG SQQNSVPSGG FNFG

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.