Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04185 | Canola | nucleus | 74.59 | 75.21 |
| Bra036362.1-P | Field mustard | nucleus | 71.31 | 75.0 |
| CDY40977 | Canola | nucleus | 71.31 | 75.0 |
| Bra017343.1-P | Field mustard | nucleus | 73.77 | 74.38 |
| CDY28961 | Canola | nucleus | 73.77 | 74.38 |
| CDX99745 | Canola | nucleus | 51.64 | 67.02 |
| Bra025169.1-P | Field mustard | cytosol | 73.77 | 52.33 |
| CDY13595 | Canola | cytosol | 73.77 | 52.33 |
| CDX83567 | Canola | nucleus | 72.13 | 51.16 |
Protein Annotations
| MapMan:35.1 | EntrezGene:822184 | UniProt:A0A178VAB1 | ProteinID:AEE77083.1 | EMBL:AJ250185 | EMBL:AK175239 |
| ArrayExpress:AT3G25882 | EnsemblPlantsGene:AT3G25882 | RefSeq:AT3G25882 | TAIR:AT3G25882 | RefSeq:AT3G25882-TAIR-G | EnsemblPlants:AT3G25882.1 |
| TAIR:AT3G25882.1 | ProteinID:BAB01050.1 | EMBL:BT026085 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0010112 | InterPro:NIMIN-2 | Symbol:NIMIN-2 | RefSeq:NP_683594.1 |
| ProteinID:OAP01943.1 | PO:PO:0000293 | PANTHER:PTHR35735 | PANTHER:PTHR35735:SF1 | UniProt:Q9LUA3 | UniParc:UPI00000ACA29 |
| SEG:seg | : | : | : | : | : |
Description
NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
Coordinates
chr3:-:9470357..9471039
Molecular Weight (calculated)
13508.9 Da
IEP (calculated)
5.992
GRAVY (calculated)
-0.842
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL
101: GLQGLGLDLN CKPEPDSVSL SL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.