Factsheet for Bra036362.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra018570.1-P
Bra024548.1-P
Bra027690.1-P
Bra030765.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25882.1	Bra018570.1-P	AT1G09270.1	21798944
AT3G25882.1	Bra030765.1-P	AT1G09270.1	21798944
AT3G25882.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G25882.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G25882.1	Bra027690.1-P	AT1G64280.1	11442055
AT3G25882.1	Bra027690.1-P	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40977	Canola	nucleus	100.0	100.0
CDX99745	Canola	nucleus	71.55	88.3
AT3G25882.1	Thale cress	nucleus	75.0	71.31
Bra017343.1-P	Field mustard	nucleus	72.41	69.42
Bra025169.1-P	Field mustard	cytosol	77.59	52.33

Protein Annotations

EnsemblPlants:Bra036362.1	EnsemblPlants:Bra036362.1-P	EnsemblPlantsGene:Bra036362	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0010112	InterPro:NIMIN-2	PANTHER:PTHR35735	PANTHER:PTHR35735:SF1	UniParc:UPI0002545B94
UniProt:M4F5K6	MapMan:35.1	:	:	:	:

Description

AT3G25882 (E=3e-041) NIMIN-2 | NIMIN-2 (NIM1-INTERACTING 2)

Coordinates

chrA02:+:22900463..22900813

Molecular Weight (calculated)

12844.2 Da

IEP (calculated)

9.295

GRAVY (calculated)

-0.858

Length

116 amino acids

Sequence
(BLAST)

001: MSSEKKQERR EEDNGDGNKG LSTKIVRTVT EEEVDEFFKI LRRVHVATRT GAKVNVGVDE RGLPTKKRKR SQSLGLVNSL HSNGVRDGEL DGITQVGLRN
101: SGLDLNCKPE PETVSL

Best Arabidopsis Sequence Match ( AT3G25882.1 )
(BLAST)

001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL

Arabidopsis Description

NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.