Factsheet for Bra025169.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra018570.1-P
Bra024548.1-P
Bra027690.1-P
Bra030765.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25882.1	Bra018570.1-P	AT1G09270.1	21798944
AT3G25882.1	Bra030765.1-P	AT1G09270.1	21798944
AT3G25882.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G25882.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G25882.1	Bra027690.1-P	AT1G64280.1	11442055
AT3G25882.1	Bra027690.1-P	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13595	Canola	cytosol	99.42	99.42
Bra036362.1-P	Field mustard	nucleus	52.33	77.59
Bra017343.1-P	Field mustard	nucleus	52.91	75.21
AT3G25882.1	Thale cress	nucleus	52.33	73.77

Protein Annotations

EnsemblPlants:Bra025169.1	EnsemblPlants:Bra025169.1-P	EnsemblPlantsGene:Bra025169	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0010112	InterPro:NIMIN-2	PANTHER:PTHR35735	PANTHER:PTHR35735:SF1	SEG:seg
UniParc:UPI000253F718	UniProt:M4E8R3	MapMan:35.1	:	:	:

Description

AT3G25882 (E=2e-036) NIMIN-2 | NIMIN-2 (NIM1-INTERACTING 2)

Coordinates

chrA06:+:22975402..22976013

Molecular Weight (calculated)

19468.3 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.653

Length

172 amino acids

Sequence
(BLAST)

001: MTCLYSKVHL KAHVMELMLQ RLNDDVIINL HHPFNLAVDD IDRSKSTPTS YKKANMSSEK KVERREEDNG DGHIGKSSME VVRTVTEEEV DEFFKILRRV
101: HVAIRTVTRA NGGIVERELT SKKRKRSQRL GLRSSLDSNG VRDGELDGID RVGLRNSGLD LNCKPEPDAV SL

Best Arabidopsis Sequence Match ( AT3G25882.1 )
(BLAST)

001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL

Arabidopsis Description

NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.