Factsheet for Bra017343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra018570.1-P
Bra024548.1-P
Bra027690.1-P
Bra030765.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25882.1	Bra018570.1-P	AT1G09270.1	21798944
AT3G25882.1	Bra030765.1-P	AT1G09270.1	21798944
AT3G25882.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G25882.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G25882.1	Bra027690.1-P	AT1G64280.1	11442055
AT3G25882.1	Bra027690.1-P	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04185	Canola	nucleus	99.17	99.17
AT3G25882.1	Thale cress	nucleus	74.38	73.77
Bra036362.1-P	Field mustard	nucleus	69.42	72.41
Bra025169.1-P	Field mustard	cytosol	75.21	52.91

Protein Annotations

EnsemblPlants:Bra017343.1	EnsemblPlants:Bra017343.1-P	EnsemblPlantsGene:Bra017343	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0010112	InterPro:NIMIN-2	PANTHER:PTHR35735	PANTHER:PTHR35735:SF1	SEG:seg
UniParc:UPI00025421CE	UniProt:M4DLG2	MapMan:35.1	:	:	:

Description

AT3G25882 (E=5e-033) NIMIN-2 | NIMIN-2 (NIM1-INTERACTING 2)

Coordinates

chrA09:+:14400338..14400703

Molecular Weight (calculated)

13671.0 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.987

Length

121 amino acids

Sequence
(BLAST)

001: MSSEMKEERR EEDNGKACGD EYRGKSSTEV VRTVTEEEVD EFFKILRRLQ VATRTVARVN GGDAERELPS KKRKRIQSLG LRSSLDTNEV QDGESDGINR
101: VGLRNLGLDL NCQPEPEAVK M

Best Arabidopsis Sequence Match ( AT3G25882.1 )
(BLAST)

001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL

Arabidopsis Description

NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.