CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93514
CDX94988
CDY04768
CDY21400
CDY25575
CDY25761
CDY31102
CDY32165
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25882.1	CDX93514	AT1G09270.1	21798944
AT3G25882.1	CDX94988	AT1G09270.1	21798944
AT3G25882.1	CDY31102	AT1G09270.1	21798944
AT3G25882.1	CDY32165	AT1G09270.1	21798944
AT3G25882.1	CDY04768	AT1G22920.1	21798944
AT3G25882.1	CDY21400	AT1G22920.1	21798944
AT3G25882.1	CDY25761	AT1G22920.1	21798944
AT3G25882.1	CDY25575	AT1G64280.1	11442055
AT3G25882.1	CDY34413	AT1G64280.1	11442055
AT3G25882.1	CDY25575	AT1G64280.1	21798944
AT3G25882.1	CDY34413	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04185	Canola	nucleus	99.17	99.17
AT3G25882.1	Thale cress	nucleus	74.38	73.77
CDY40977	Canola	nucleus	69.42	72.41
CDX99745	Canola	nucleus	48.76	62.77
CDY13595	Canola	cytosol	75.21	52.91
CDX83567	Canola	nucleus	73.55	51.74

Protein Annotations

EnsemblPlants:CDY28961	EnsemblPlantsGene:GSBRNA2T00041671001	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0010112	InterPro:NIMIN-2	PANTHER:PTHR35735	PANTHER:PTHR35735:SF1	ProteinID:CDY28961	ProteinID:CDY28961.1
SEG:seg	UniParc:UPI0004EAB4C0	UniProt:A0A078GTW5	MapMan:35.1	:	:

Description

BnaA02g25150DBnaA02g25150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTW5]

Coordinates

chrLK032228:+:365777..366425

Molecular Weight (calculated)

13692.1 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.941

Length

121 amino acids

Sequence
(BLAST)

001: MSSEMKEERR EEDNGKACGD EYRGKSSTEV VRTVTEEEVD EFFKILRRLH VATRIVARVN GGDAERELPS KKRKRIQSLG LRSSLDTNEV QDGESDGINR
101: VGLRNLGLDL NCQPEPEAVK M

Best Arabidopsis Sequence Match ( AT3G25882.1 )
(BLAST)

001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL

Arabidopsis Description

NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.