CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX89318
CDX92401
CDX94304
CDX95314
CDX97358
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14340.1	CDX73678	AT3G51920.1	17360592
AT4G14340.1	CDX95314	AT3G51920.1	17360592
AT4G14340.1	CDY23174	AT3G51920.1	17360592
AT4G14340.1	CDY06478	AT4G14640.1	17360592
AT4G14340.1	CDX89318	AT4G26630.1	25387881
AT4G14340.1	CDX94304	AT4G26630.1	25387881
AT4G14340.1	CDX97358	AT4G26630.1	25387881
AT4G14340.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010762.1-P	Field mustard	cytosol	100.0	100.0
CDY12062	Canola	cytosol	96.9	97.99
AT4G14340.1	Thale cress	cytosol	87.17	86.21
CDY12761	Canola	cytosol	84.96	86.1
CDY49413	Canola	cytosol	85.18	84.99
CDY10056	Canola	cytosol	31.42	81.14
VIT_05s0049g01240.t01	Wine grape	cytosol	79.87	77.8
CDY18127	Canola	cytosol	74.34	77.6
CDY66573	Canola	cytosol	74.34	77.6
KRH34398	Soybean	nucleus	75.66	75.66
Solyc06g053560.2.1	Tomato	cytosol	73.89	75.57
KRG92405	Soybean	cytosol	75.22	74.56
Solyc09g090250.2.1	Tomato	nucleus	74.34	72.41
CDX89823	Canola	cytosol	69.91	68.1
CDY14873	Canola	cytosol	71.46	68.0
CDY56353	Canola	cytosol	71.9	67.99
CDY32520	Canola	cytosol	68.36	67.76
CDY14235	Canola	cytosol	69.25	67.75
CDY43608	Canola	cytosol	72.12	67.63
CDY32954	Canola	cytosol	72.12	67.63
CDY10089	Canola	cytosol	67.92	67.47
CDY54479	Canola	cytosol	70.8	67.09
CDY18233	Canola	cytosol	69.91	66.95
CDY53188	Canola	cytosol	69.03	66.81
CDX97446	Canola	cytosol	68.36	66.45
CDY69732	Canola	cytosol	68.36	66.45
CDY13126	Canola	cytosol	70.13	66.32
CDY35198	Canola	cytosol	69.47	66.24
CDY36972	Canola	cytosol	70.13	66.18
CDY38379	Canola	cytosol	69.25	66.03
CDX92883	Canola	cytosol	69.47	65.28
CDY51704	Canola	cytosol	69.25	65.07
CDX70305	Canola	cytosol	42.04	64.19
CDY20695	Canola	cytosol	55.09	59.57
CDY32908	Canola	cytosol	54.87	59.19
CDX88601	Canola	cytosol	55.97	58.84
CDY38255	Canola	cytosol	55.75	58.6
CDY11892	Canola	cytosol	55.75	58.6
CDY54387	Canola	cytosol	55.75	58.2
CDY49859	Canola	cytosol	58.41	56.77
CDX94377	Canola	cytosol	57.3	56.3
CDX96430	Canola	cytosol	57.52	55.91
CDY53866	Canola	cytosol	54.87	55.61
CDX72938	Canola	cytosol	57.3	54.76
CDY06860	Canola	cytosol	49.34	53.48
CDX92899	Canola	cytosol	49.78	53.44
CDY50929	Canola	cytosol	49.34	52.97
CDY35229	Canola	cytosol	48.45	52.52
CDY69293	Canola	cytosol	39.38	51.15
CDX82685	Canola	cytosol, nucleus, vacuole	21.02	30.55
CDX76739	Canola	cytosol	32.3	24.33
CDY11509	Canola	cytosol	30.31	24.25
CDY21505	Canola	cytosol	32.74	24.07
CDY23629	Canola	cytosol	26.77	23.05
CDY55141	Canola	cytosol	30.75	21.99
CDX97505	Canola	mitochondrion	30.75	21.29
CDX75726	Canola	mitochondrion	30.53	21.17
CDX82524	Canola	mitochondrion	30.53	21.1
CDY51243	Canola	cytosol	31.64	20.91
CDX70801	Canola	cytosol	31.64	20.91
CDY02641	Canola	cytosol	31.19	20.55
CDY51730	Canola	cytosol	30.75	20.32
CDY38493	Canola	cytosol	30.97	20.29
CDY25451	Canola	cytosol	30.75	20.14
CDY29971	Canola	cytosol	30.53	19.63
CDY21155	Canola	cytosol	30.31	19.46
CDY42890	Canola	cytosol	30.09	19.43
CDY53253	Canola	plastid	31.19	18.5
CDY50866	Canola	cytosol	29.87	16.92
CDY69292	Canola	cytosol	3.1	3.23
CDX94378	Canola	cytosol	2.65	2.76

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:A0A078DLV0	EnsemblPlants:CDX90256	ProteinID:CDX90256	ProteinID:CDX90256.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00150824001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF178	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002546D2E	SEG:seg

Description

BnaA08g17280D

Coordinates

chrLK031862:+:944602..946958

Molecular Weight (calculated)

51498.2 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.719

Length

452 amino acids

Sequence
(BLAST)

001: MDQEVVIGGK FKLGRKLGSG SFGELYLGIN IQTGEEVAVK LEPVKTRHPQ LQYESKIYMF LQGGTGVPHL KWFGVEGEYS CMVIDLLGPS LEDLFNYSNR
101: IFSLKSVLML ADQLICRVEY MHSRGFLHRD IKPDNFLMGL GRKANQVYII DYGLAKKYKD LQTQKHIPYR ENKNLTGTAR YASVNTHLGI EQSRRDDLES
201: LGYVLMYFLR GSLPWQGLRG GTKKQKYDKI SEKKMLTPAE ILCKSYPSEF TSYFHYCRSL RFEDKPDYSY LRRLFRDLFI REGYQLDYVF DWTNLKYPQT
301: GSSSRPRPTP RPALDLTGSP ADRSQKPTVG KDLRERFSGA IEALTRRNVS SQGAAHGDRS TRYRSSDVKK DKQESSDRHR SSSRNGSRGV MSSSRPVSSA
401: EPSENRSSRL FSSTSQRVQQ SSESKPSSAA AGHEDAIRRF ELLTIGSGKK RK

Best Arabidopsis Sequence Match ( AT4G14340.1 )
(BLAST)

001: MDRNQKMDHV IGGKFKLGRK LGSGSFGELY LGINIQTGEE VAVKLEPVKT RHPQLQYESK IYMFLQGGTG VPHLKWFGVE GEYSCMVIDL LGPSLEDLFN
101: YCKRIFSLKS VLMLADQLIC RVEYMHSRGF LHRDIKPDNF LMGLGRRANQ VYIIDYGLAK KYKDLQTQKH IPYRENKNLT GTARYASVNT HLGIEQSRRD
201: DLESLGYVLM YFLRGSLPWQ GLKAGTKKQK YDKISEKKML TSVETLCKSY PSEFTSYFHY CRSLRFEDKP DYSYLRRLFR DLFIREGYQL DYVFDWTISK
301: YPQIGSSSRP RPTPRPALDP PGPPAERAEK PTVGQDLRGR FTGAIEAFTR RNVSSQGALG DRSRHRSSDD IPSSAKEVHE SRNGSTSKRG VISSTRPGSS
401: AEPSENHSSR LFSSGSRHAT TQRVPQSYES AAAARPGHED AIRNFELLTI GSGKKRK

Arabidopsis Description

CKL11Casein kinase 1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q39050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.