Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P12280_001 | Banana | nucleus | 49.69 | 40.93 |
| PGSC0003DMT400062322 | Potato | nucleus | 28.3 | 35.43 |
| GSMUA_Achr11P... | Banana | nucleus | 31.45 | 34.72 |
| GSMUA_Achr11P... | Banana | nucleus | 31.45 | 32.68 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 42.77 | 32.23 |
| GSMUA_Achr11P... | Banana | nucleus | 42.14 | 32.21 |
| GSMUA_Achr5P10250_001 | Banana | nucleus | 42.77 | 31.48 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 42.14 | 31.46 |
| GSMUA_Achr11P... | Banana | nucleus | 32.08 | 31.29 |
| GSMUA_Achr10P... | Banana | nucleus | 38.99 | 30.69 |
| GSMUA_Achr1P24070_001 | Banana | nucleus | 38.99 | 29.25 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 23.9 | 27.34 |
| GSMUA_Achr11P... | Banana | nucleus | 7.55 | 7.55 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 3.77 | 4.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 1.89 | 3.03 |
| Os03t0834466-00 | Rice | nucleus | 0.63 | 1.54 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 0.63 | 1.41 |
| GSMUA_Achr5P20280_001 | Banana | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G02770_001 | EnsemblPlants:GSMUA_Achr11P02770_001 | EnsemblPlants:GSMUA_Achr11T02770_001 | InterPro:IPR002487 |
| UniProt:M0RNV7 | PFAM:PF01486 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF349 | InterPro:TF_Kbox |
| UniParc:UPI00029584B6 | SEG:seg | : | : | : | : |
Description
Putative MADS-box transcription factor 50 [Source:GMGC_GENE;Acc:GSMUA_Achr11G02770_001]
Coordinates
chr11:-:1957658..1958860
Molecular Weight (calculated)
18069.5 Da
IEP (calculated)
6.800
GRAVY (calculated)
-0.791
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSTIERYRE HSKEDTSSTT MEQDAEQWKN EASFISKKIE VLEASKQKLL GEKLESCSLE ELHELEGTIE QSLRSIRGRK ASRLLNISHH LLSEKISQLK
101: EKESSLVKEN SLLREKCKLL PGLPSAASKE VVPSTNLDQH TEVETELRIG FPGRKTHGM
101: EKESSLVKEN SLLREKCKLL PGLPSAASKE VVPSTNLDQH TEVETELRIG FPGRKTHGM
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.