Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P20280_001 | Banana | nucleus | 31.9 | 82.54 |
| TraesCS1B01G214600.1 | Wheat | nucleus | 31.29 | 82.26 |
| GSMUA_Achr11P... | Banana | nucleus | 62.58 | 70.83 |
| GSMUA_Achr11P... | Banana | nucleus | 58.9 | 62.75 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 48.47 | 56.83 |
| GSMUA_Achr8P12280_001 | Banana | nucleus | 56.44 | 47.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.61 | 45.45 |
| GSMUA_Achr11P... | Banana | nucleus | 55.83 | 43.75 |
| GSMUA_Achr10P... | Banana | nucleus | 53.37 | 43.07 |
| GSMUA_Achr5P10250_001 | Banana | nucleus | 57.06 | 43.06 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 54.6 | 42.18 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 54.6 | 41.78 |
| GSMUA_Achr1P24070_001 | Banana | nucleus | 51.53 | 39.62 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 30.06 | 38.89 |
| GSMUA_Achr11P... | Banana | nucleus | 31.9 | 32.7 |
| GSMUA_Achr11P... | Banana | nucleus | 31.29 | 32.08 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr11G02790_001 | EnsemblPlants:GSMUA_Achr11P02790_001 |
| EnsemblPlants:GSMUA_Achr11T02790_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0RNV9 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0002962F72 | : | : | : | : |
Description
MADS-box protein SOC1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G02790_001]
Coordinates
chr11:-:1986785..1990469
Molecular Weight (calculated)
18539.4 Da
IEP (calculated)
9.683
GRAVY (calculated)
-0.465
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKREMKR IENATSRQVT FSKRRKGLLK KAFELSVLCD VEVALIIFSS GGKLYEFASS SMLSAIERYR AHSREDSIST KMEQDIEGGE YEAAWISKRI
101: ELIEASKQKL LGKNLGSCSL DELHELEGKL EESLHSIRER KASQNRTYFI SVKLSTKNIL TSC
101: ELIEASKQKL LGKNLGSCSL DELHELEGKL EESLHSIRER KASQNRTYFI SVKLSTKNIL TSC
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.