Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G300100.3 | Wheat | nucleus | 98.41 | 98.05 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 96.92 | 97.19 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 84.24 | 90.39 |
| Zm00001d051026_P001 | Maize | cytosol | 9.51 | 88.7 |
| Os04t0421900-01 | Rice | plasma membrane | 84.14 | 81.93 |
| OQU81566 | Sorghum | nucleus | 83.68 | 81.69 |
| Zm00001d025398_P005 | Maize | nucleus | 83.49 | 79.2 |
| Zm00001d003713_P006 | Maize | nucleus | 80.22 | 75.5 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 66.04 | 63.9 |
| VIT_18s0072g00720.t01 | Wine grape | cytosol, plastid | 55.69 | 61.04 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 26.68 | 59.34 |
| KRH34989 | Soybean | endoplasmic reticulum | 57.37 | 56.58 |
| Solyc12g056520.1.1 | Tomato | cytosol | 51.49 | 56.5 |
| KRG91797 | Soybean | cytosol | 56.9 | 56.01 |
| Bra003706.1-P | Field mustard | nucleus | 56.34 | 55.82 |
| CDX68084 | Canola | nucleus | 56.16 | 55.74 |
| CDY13565 | Canola | nucleus | 54.76 | 55.64 |
| CDX85974 | Canola | nucleus | 56.16 | 55.64 |
| AT1G76850.1 | Thale cress | nucleus | 56.34 | 55.41 |
| AT1G21170.2 | Thale cress | nucleus | 56.06 | 54.69 |
| Solyc04g071350.2.1 | Tomato | nucleus | 55.41 | 53.71 |
| PGSC0003DMT400061943 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.98 | 49.77 |
| PGSC0003DMT400027989 | Potato | nucleus | 7.93 | 41.06 |
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 5.5 | 40.97 |
| CDY45950 | Canola | cytosol | 12.5 | 38.07 |
| Bra008282.1-P | Field mustard | cytosol | 40.49 | 37.84 |
| CDY45951 | Canola | extracellular | 4.38 | 29.56 |
| CDY04603 | Canola | cytosol | 2.24 | 24.0 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G298000.2 | EnsemblPlantsGene:TraesCS2D01G298000 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | InterPro:Cullin_repeat-like_dom_sf | InterPro:EXOC2/Sec5 |
| PANTHER:PTHR13043 | PFAM:PF15469 | SEG:seg | SUPFAM:SSF74788 | MapMan:22.6.3.3 | : |
Description
No Description!
Coordinates
chr2D:+:380406685..380422308
Molecular Weight (calculated)
119798.0 Da
IEP (calculated)
6.134
GRAVY (calculated)
-0.488
Length
1072 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDSDVDEDE LLQMALQEQA ARDLSHQRPA GANKPVVNLV RPPANARGGA KARQPSRGGD EDDDSEVEML SISSGDEDGA PARERGPPPP RGGGRAGARR
0101: AASRDDADLD DAEPRSWKRV DEAELARRVR EMREARAAPS VQALDQKAAA AAAARKALTS VQTLPKGVEV LDPLGLGVMD NKSLRLITEA SMSSPVSREK
0201: SQGLDPSMRE KVIYSSPHFD PKVFLSWVHK DTSAADLESG ALTLKTDLKG RTQQKKQLVK ENFDCFVSCK TTIDDIESKL RQIEDDPEGA GTSHLYSVTQ
0301: KISGVANRAF EPLFERQAQA DKIRSVQGML QRFRTLFNLP SAIRGNIRKG EYDLAVREYQ KAKSIVLPSH VGILKRVLEE VEKVMHEFRG MLYKSMEDPH
0401: LDLAELENIV RLLLELEPET DPVWHYLNIQ NGRIHGLFEK CTVDHEVRME ILQNKRHEKV LSDSKWRQLQ QESNKSLEVD SAIGDSFQDD QLSSTFMAEE
0501: ADSLRATYIR RLSAVLIQHV PAFWRLALSV FSGKFAKAAA GNALADSEMN AKSGANKTDD KGAEAKYTNH SLDEVASMVC ATVSVFDTKV QNTFRDFEEC
0601: NILRPFMGDT IKEIAKACQT LEGKDSSPTA VKMLHALHSE MTKLYILRLC SWMRVTTKEV SKHETWVTLS TLERNKSPYA ISCLPLEFRE ITISAMDRIE
0701: LMIFNLRNET AKSYDITRQL QEIHESVRLA FLNSFRDFAG YLGTFGAELA QSRSNKENNH VQNGYMNGTD RESSASMDGD LHKKLLVVLS NIGYCKAELS
0801: DQLYNKYRHI WSPIRDNDER SADMRDLVTS FSGLEDKVLD QYTFAKSNVI RNAAHNYLLD SGIHWGAAPV VKGIRDATLD LLHILVAVHA EVYSGARPLL
0901: EKTMKILVEG LVDIFLSLFY ENKAKDLRTL DANGFCQLML ELEYFETVLN TYFSTEAQQA LKSLQESLLE KACESGSEDA ASDDKQVPSV SPDDLLALAQ
1001: QHGSDLLQGE LERTRLNIAC FMEPTLQSGS KTSAYSSYQA PAPHHPQAQV SSPSFRRQQA SSNSPIVSRR RR
0101: AASRDDADLD DAEPRSWKRV DEAELARRVR EMREARAAPS VQALDQKAAA AAAARKALTS VQTLPKGVEV LDPLGLGVMD NKSLRLITEA SMSSPVSREK
0201: SQGLDPSMRE KVIYSSPHFD PKVFLSWVHK DTSAADLESG ALTLKTDLKG RTQQKKQLVK ENFDCFVSCK TTIDDIESKL RQIEDDPEGA GTSHLYSVTQ
0301: KISGVANRAF EPLFERQAQA DKIRSVQGML QRFRTLFNLP SAIRGNIRKG EYDLAVREYQ KAKSIVLPSH VGILKRVLEE VEKVMHEFRG MLYKSMEDPH
0401: LDLAELENIV RLLLELEPET DPVWHYLNIQ NGRIHGLFEK CTVDHEVRME ILQNKRHEKV LSDSKWRQLQ QESNKSLEVD SAIGDSFQDD QLSSTFMAEE
0501: ADSLRATYIR RLSAVLIQHV PAFWRLALSV FSGKFAKAAA GNALADSEMN AKSGANKTDD KGAEAKYTNH SLDEVASMVC ATVSVFDTKV QNTFRDFEEC
0601: NILRPFMGDT IKEIAKACQT LEGKDSSPTA VKMLHALHSE MTKLYILRLC SWMRVTTKEV SKHETWVTLS TLERNKSPYA ISCLPLEFRE ITISAMDRIE
0701: LMIFNLRNET AKSYDITRQL QEIHESVRLA FLNSFRDFAG YLGTFGAELA QSRSNKENNH VQNGYMNGTD RESSASMDGD LHKKLLVVLS NIGYCKAELS
0801: DQLYNKYRHI WSPIRDNDER SADMRDLVTS FSGLEDKVLD QYTFAKSNVI RNAAHNYLLD SGIHWGAAPV VKGIRDATLD LLHILVAVHA EVYSGARPLL
0901: EKTMKILVEG LVDIFLSLFY ENKAKDLRTL DANGFCQLML ELEYFETVLN TYFSTEAQQA LKSLQESLLE KACESGSEDA ASDDKQVPSV SPDDLLALAQ
1001: QHGSDLLQGE LERTRLNIAC FMEPTLQSGS KTSAYSSYQA PAPHHPQAQV SSPSFRRQQA SSNSPIVSRR RR
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
Arabidopsis Description
SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.