Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G76850.1 | Thale cress | nucleus | 79.25 | 79.91 |
| VIT_18s0072g00720.t01 | Wine grape | cytosol, plastid | 61.15 | 68.71 |
| Solyc12g056520.1.1 | Tomato | cytosol | 55.78 | 62.74 |
| KRH34989 | Soybean | endoplasmic reticulum | 62.06 | 62.74 |
| KRG91797 | Soybean | cytosol | 61.97 | 62.53 |
| Solyc04g071350.2.1 | Tomato | nucleus | 62.24 | 61.84 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 57.14 | 56.68 |
| Os04t0421900-01 | Rice | plasma membrane | 56.23 | 56.13 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 54.69 | 56.06 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 54.78 | 55.95 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 54.32 | 55.85 |
| OQU81566 | Sorghum | nucleus | 54.96 | 55.01 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 49.95 | 54.95 |
| PGSC0003DMT400027989 | Potato | nucleus | 8.92 | 47.34 |
| Zm00001d036062_P001 | Maize | cytosol | 7.37 | 46.55 |
| Zm00001d039959_P001 | Maize | cytosol | 6.64 | 43.2 |
Protein Annotations
| MapMan:22.6.3.3 | EntrezGene:838713 | UniProt:A0A1P8AUR0 | ProteinID:ANM60357.1 | ArrayExpress:AT1G21170 | EnsemblPlantsGene:AT1G21170 |
| RefSeq:AT1G21170 | TAIR:AT1G21170 | RefSeq:AT1G21170-TAIR-G | EnsemblPlants:AT1G21170.2 | Unigene:At.46455 | InterPro:Cullin_repeat-like_dom_sf |
| InterPro:EXOC2/Sec5 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | RefSeq:NP_001322652.1 | PFAM:PF15469 | PANTHER:PTHR13043 |
| Symbol:SEC5B | SUPFAM:SSF74788 | UniParc:UPI000848B95D | SEG:seg | : | : |
Description
SEC5BExocyst complex component SEC5 [Source:TAIR;Acc:AT1G21170]
Coordinates
chr1:+:7413050..7419643
Molecular Weight (calculated)
123637.0 Da
IEP (calculated)
5.957
GRAVY (calculated)
-0.543
Length
1099 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSSDDLDED ELLQMALKEQ SQRDVTYQKP PSANSRKPVT NLVQQPRRQK RAAAPPSKGG AKASRKPSMD EDDESEVELL SISSGDEDEG NDRGRGGGGD
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLVS SPVKAAILLR
0501: DKQDSDNQVQ VDQPLEESAR REKDALRGRY IKILTAVIVY HLPTFWKTAL SVFTGKFAKS SQVNDTSASK AEEKAEEARY SSHSLEEIAG MIRNTISVYE
0601: AKVQSTFHDF DESYILHPYM SDTIKEVSKA CQAFEAKESA PHSAVMALRK VKVEITKIYI QRLCSWMRAS TEEISKEETW IPVSILERNR SPYSISYLPL
0701: AFRSIIVSGM EQINMMILSL KGEAARSEDM FAHIEEILIS VRLAFLNCFL DFAAHLEQIG ADLSQRTTKR ESWQNGYSND HQEEQSINAP ESVVDPHRQL
0801: LMILSNIGYC KDELASELYN KYKYTWLQSR RNDEDISDLQ DLMMSFSGLG EKVLEHYTFA KANLIRTAAT NYLLDSGIQW GAAPPVKGIR DAAVELLHTL
0901: VAVHAEVFAG AKPLLDKILG TLVEGLIDTF LSLLDENRSD DLSSIDANGF CQLMLELEYF ETILKPYLTV DATESLKSLQ GAVLEKAIES ISETVENNPG
1001: GHQRKPTRGS EDAISDDKQS SVSPDDLLAL AQQCTSGMLQ LELEKTRLNS ACFIETIPLD PVPPVAKAAY SRTSTDSPSR NYRESQPMGS PVQARPRRR
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLVS SPVKAAILLR
0501: DKQDSDNQVQ VDQPLEESAR REKDALRGRY IKILTAVIVY HLPTFWKTAL SVFTGKFAKS SQVNDTSASK AEEKAEEARY SSHSLEEIAG MIRNTISVYE
0601: AKVQSTFHDF DESYILHPYM SDTIKEVSKA CQAFEAKESA PHSAVMALRK VKVEITKIYI QRLCSWMRAS TEEISKEETW IPVSILERNR SPYSISYLPL
0701: AFRSIIVSGM EQINMMILSL KGEAARSEDM FAHIEEILIS VRLAFLNCFL DFAAHLEQIG ADLSQRTTKR ESWQNGYSND HQEEQSINAP ESVVDPHRQL
0801: LMILSNIGYC KDELASELYN KYKYTWLQSR RNDEDISDLQ DLMMSFSGLG EKVLEHYTFA KANLIRTAAT NYLLDSGIQW GAAPPVKGIR DAAVELLHTL
0901: VAVHAEVFAG AKPLLDKILG TLVEGLIDTF LSLLDENRSD DLSSIDANGF CQLMLELEYF ETILKPYLTV DATESLKSLQ GAVLEKAIES ISETVENNPG
1001: GHQRKPTRGS EDAISDDKQS SVSPDDLLAL AQQCTSGMLQ LELEKTRLNS ACFIETIPLD PVPPVAKAAY SRTSTDSPSR NYRESQPMGS PVQARPRRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.