Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g069080.2.1 | |
| Solyc06g065380.2.1 | |
| Solyc09g075280.1.1 | plasma membrane |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071350.2.1 | Tomato | nucleus | 73.59 | 65.01 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 29.99 | 60.79 |
| KRH34989 | Soybean | endoplasmic reticulum | 65.71 | 59.06 |
| KRG91797 | Soybean | cytosol | 65.51 | 58.77 |
| CDY13565 | Canola | nucleus | 61.92 | 57.35 |
| AT1G76850.1 | Thale cress | nucleus | 63.36 | 56.79 |
| CDX68084 | Canola | nucleus | 62.54 | 56.57 |
| Bra003706.1-P | Field mustard | nucleus | 62.54 | 56.47 |
| CDX85974 | Canola | nucleus | 62.44 | 56.38 |
| AT1G21170.2 | Thale cress | nucleus | 62.74 | 55.78 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 54.86 | 53.65 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 59.26 | 52.26 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 56.5 | 51.64 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 56.81 | 51.58 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 56.5 | 51.49 |
| Os04t0421900-01 | Rice | plasma membrane | 57.73 | 51.23 |
| OQU81566 | Sorghum | nucleus | 57.11 | 50.82 |
| Zm00001d036062_P001 | Maize | cytosol | 9.01 | 50.57 |
| Zm00001d039959_P001 | Maize | cytosol | 7.88 | 45.56 |
| Bra008282.1-P | Field mustard | cytosol | 48.82 | 41.59 |
| CDY45950 | Canola | cytosol | 14.84 | 41.19 |
| PGSC0003DMT400027989 | Potato | nucleus | 8.7 | 41.06 |
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 2.05 | 13.89 |
Protein Annotations
| EnsemblPlants:Solyc12g056520.1.1 | EnsemblPlantsGene:Solyc12g056520.1 | GO:GO:0000145 | GO:GO:0001927 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:Cullin_repeat-like_dom_sf | InterPro:EXOC2/Sec5 | ncoils:Coil | PANTHER:PTHR13043 | PFAM:PF15469 |
| SEG:seg | SUPFAM:SSF74788 | UniParc:UPI000276A037 | UniProt:K4DFY3 | MapMan:22.6.3.3 | : |
Description
No Description!
Coordinates
chr12:-:62463846..62481167
Molecular Weight (calculated)
110149.0 Da
IEP (calculated)
5.411
GRAVY (calculated)
-0.463
Length
977 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNLKKKLYS VCGKDDDAHW QGGEPDCWKR VDEDELRRHV RDMREARAIP ATQIKAEEEK MALAKKALQS LQSFPRGMEC IDPLRLGIVD NRTLRMISEH
101: SSSSPTVGDL DPKTREGLNY FSEKFDSKLF ISRIHQDTGA ADLEGGAVSL KTDLKGRMQQ KKQLVKENFD CFVSCKTTID DIESKLRRIE EDPEGSGTKH
201: LYDCMQGVNS IANRAFESLF ERQAQAEKIR SVQGTIQRFR TLFNLPSAIR ESISKGEYDL AVREYRKANS IVLPSHVGIL KRVVGEVEKV IQEFKGMLYK
301: SLEDPNIDLT NLENIVRLLL ELEPESDPVW HYLNIQNHRI RGLLEKCSSD HEARMENLQN EMRAKASYDA KWRQIQQDLN HSSDIDSELL VMTGEQGDAF
401: RGKYIRRLTA VVIHHVPAFW KVSVSVFSGK FAKASQVSSD SNVNASAKRT EEKVGDGKYC SHSLDEVAGM LQSTLSAYGS EVQNTFRDLE ESNILCPYMS
501: DAIKEISKAC CAFEAKESAP PVAVTALRTL QSEVTKINVL RLCSWMRTTT EKITKDETWI PVSILERNRS PYTISSLPLA FRSIITFAMD QINTLIQSLR
601: NEAMKLEDIF LLLQEIQESV RLAFLNCLLN FAGQLGHTGN QLLNEHDRES AHFQNGHAEP EDKSSDPLPG SIVNPHRQLL MVVSNIGYFK DELAHELYSK
701: YRRTWQQSRG KDEEDADMQD LIASFSGFEE NVLEQYTLAK RNLFRTAAVN YLLESGVQWG AAPAVEGVRD AAVDLLHTLV AVHAEVFAGC KPLLDKTLGI
801: LVEGLIDTFL SLFHENQETD FTVLDVNGFC QLMLELDYFE TILNTYFTHE ARESLKTLQG VLLEKATESV PETVETPTNS RRQTRGNDDG LQDERQQGGT
901: ISPDDLIALA QQYSSELLQS ELERTRINTA CFVESISPDS VPDSAKAAYA SFRGSMDSPG RGSQSVGPPS YSKQRRR
101: SSSSPTVGDL DPKTREGLNY FSEKFDSKLF ISRIHQDTGA ADLEGGAVSL KTDLKGRMQQ KKQLVKENFD CFVSCKTTID DIESKLRRIE EDPEGSGTKH
201: LYDCMQGVNS IANRAFESLF ERQAQAEKIR SVQGTIQRFR TLFNLPSAIR ESISKGEYDL AVREYRKANS IVLPSHVGIL KRVVGEVEKV IQEFKGMLYK
301: SLEDPNIDLT NLENIVRLLL ELEPESDPVW HYLNIQNHRI RGLLEKCSSD HEARMENLQN EMRAKASYDA KWRQIQQDLN HSSDIDSELL VMTGEQGDAF
401: RGKYIRRLTA VVIHHVPAFW KVSVSVFSGK FAKASQVSSD SNVNASAKRT EEKVGDGKYC SHSLDEVAGM LQSTLSAYGS EVQNTFRDLE ESNILCPYMS
501: DAIKEISKAC CAFEAKESAP PVAVTALRTL QSEVTKINVL RLCSWMRTTT EKITKDETWI PVSILERNRS PYTISSLPLA FRSIITFAMD QINTLIQSLR
601: NEAMKLEDIF LLLQEIQESV RLAFLNCLLN FAGQLGHTGN QLLNEHDRES AHFQNGHAEP EDKSSDPLPG SIVNPHRQLL MVVSNIGYFK DELAHELYSK
701: YRRTWQQSRG KDEEDADMQD LIASFSGFEE NVLEQYTLAK RNLFRTAAVN YLLESGVQWG AAPAVEGVRD AAVDLLHTLV AVHAEVFAGC KPLLDKTLGI
801: LVEGLIDTFL SLFHENQETD FTVLDVNGFC QLMLELDYFE TILNTYFTHE ARESLKTLQG VLLEKATESV PETVETPTNS RRQTRGNDDG LQDERQQGGT
901: ISPDDLIALA QQYSSELLQS ELERTRINTA CFVESISPDS VPDSAKAAYA SFRGSMDSPG RGSQSVGPPS YSKQRRR
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
Arabidopsis Description
SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.