Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g069080.2.1 | |
| Solyc06g065380.2.1 | |
| Solyc09g075280.1.1 | plasma membrane |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g056520.1.1 | Tomato | cytosol | 65.01 | 73.59 |
| KRH34989 | Soybean | endoplasmic reticulum | 66.09 | 67.25 |
| KRG91797 | Soybean | cytosol | 65.01 | 66.02 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 28.48 | 65.35 |
| CDY13565 | Canola | nucleus | 60.31 | 63.22 |
| CDX85974 | Canola | nucleus | 61.84 | 63.22 |
| CDX68084 | Canola | nucleus | 61.57 | 63.06 |
| Bra003706.1-P | Field mustard | nucleus | 61.57 | 62.94 |
| AT1G76850.1 | Thale cress | nucleus | 61.84 | 62.75 |
| AT1G21170.2 | Thale cress | nucleus | 61.84 | 62.24 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 57.32 | 57.22 |
| Os04t0421900-01 | Rice | plasma membrane | 55.79 | 56.04 |
| OQU81566 | Sorghum | nucleus | 55.52 | 55.92 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 53.71 | 55.57 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 53.71 | 55.41 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 53.89 | 55.39 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 48.82 | 54.05 |
| Zm00001d036062_P001 | Maize | cytosol | 7.59 | 48.28 |
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 6.24 | 47.92 |
| Bra008282.1-P | Field mustard | cytosol | 45.93 | 44.29 |
| Zm00001d039959_P001 | Maize | cytosol | 6.69 | 43.79 |
| CDY45950 | Canola | cytosol | 12.93 | 40.62 |
Protein Annotations
| EnsemblPlants:Solyc04g071350.2.1 | EnsemblPlantsGene:Solyc04g071350.2 | GO:GO:0000145 | GO:GO:0001927 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:Cullin_repeat-like_dom_sf | InterPro:EXOC2/Sec5 | ncoils:Coil | PANTHER:PTHR13043 | PFAM:PF15469 |
| SEG:seg | SUPFAM:SSF74788 | UniParc:UPI0002766841 | UniProt:K4BTC7 | MapMan:22.6.3.3 | : |
Description
No Description!
Coordinates
chr4:+:58273153..58298689
Molecular Weight (calculated)
124686.0 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.542
Length
1106 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTDTDDEDE LLQIALQEQA QRNINYQKPS KQPSKPVRNF VQPPSQPNLR VAAGATSERK NPNIAAAMQK TSNKSSSNQR KTVEDDDDSE IEMLSISSGD
0101: EDSSKDRGFG SRNRVVSGGG RAGREDDGLW DGGEPDSWKR VDESELRRRV REMREARVVA TTQKPEQEKT AVPKKDLNNL QSFPRGMECV DPLKLGIVDN
0201: RTLRLISENI SSSPSIGDRD HLDPNVRERL NYFSEKFDPK LFLCRIHQDT SASELESGAL AVKTDLKGRT LQRKQLVKEN FDCFVSCKTT IDDIESKLRR
0301: IEEDPEGSGT SHLFNCIEGV SSIANRAFGP LFERQAQAEK IRSVQGMLQR FRTLFNLPST IRHSISTGEY DLAVREYRKA KSIVLPSHVG ILKRVLEEVE
0401: RVMQEFKGKL YKSLEDPQID LTNLENNVRL LLELEPESDP VWHYLNIQNH RIRGLLEKCT LDHEARTENF RTEMRERALS DAKWRHIQQD LNNTPDAAYS
0501: DSIENTYLMG DSQQVEFTGE KVDALRGSYI RRLTAVIIYH VPVFWRVAVA VLSEKFAKSS QVSSDSNVSA SANKREEKAG DGKYSNHSLD EVAGMVRSTI
0601: SAYESKVQNA FGDLEESNIL GPYMSAAIKE ITKACQAFEA KESAPSTAVA ALRTLQCEVS KVYILRLCSW MRSTVEEISK DESWVAVSIL QRNRSPYTIS
0701: SLPLAFRSII TSAMDQINVM IESLQNEAMK SEEIYVQLQG IQESVRLALL NCLLNFAGHL EQIGGQRNLN KSNRESPYFQ NGYLEVEEKT SEPLPGSIVD
0801: PQLQLLMVLS NIGYCKDELA RELYCKYKEI WMQNRSKDEE DSDIRELVIS FARLEEKVLE QYTFAKTNLI RTAAINYFLD GGVQWGAAPA VTGVRDAAVE
0901: LLHTLVAVHA EVFAGCKPLL EKTLGILVEG LIDTFLSLFH ENQDRDLRAL DANGFCQLML ELDYFETILN PYFTHEARES FKTLQGALLD KATECVADST
1001: ETPTHNRRPT RGSDDVFLDD RQQGMTVSPD DLIALAQQYS SELLQSELER TRLNTACFVE STPLDSVPES AKAAHASLRG SVDSPSRNYR GSQHIGSPSF
1101: SRPRRR
0101: EDSSKDRGFG SRNRVVSGGG RAGREDDGLW DGGEPDSWKR VDESELRRRV REMREARVVA TTQKPEQEKT AVPKKDLNNL QSFPRGMECV DPLKLGIVDN
0201: RTLRLISENI SSSPSIGDRD HLDPNVRERL NYFSEKFDPK LFLCRIHQDT SASELESGAL AVKTDLKGRT LQRKQLVKEN FDCFVSCKTT IDDIESKLRR
0301: IEEDPEGSGT SHLFNCIEGV SSIANRAFGP LFERQAQAEK IRSVQGMLQR FRTLFNLPST IRHSISTGEY DLAVREYRKA KSIVLPSHVG ILKRVLEEVE
0401: RVMQEFKGKL YKSLEDPQID LTNLENNVRL LLELEPESDP VWHYLNIQNH RIRGLLEKCT LDHEARTENF RTEMRERALS DAKWRHIQQD LNNTPDAAYS
0501: DSIENTYLMG DSQQVEFTGE KVDALRGSYI RRLTAVIIYH VPVFWRVAVA VLSEKFAKSS QVSSDSNVSA SANKREEKAG DGKYSNHSLD EVAGMVRSTI
0601: SAYESKVQNA FGDLEESNIL GPYMSAAIKE ITKACQAFEA KESAPSTAVA ALRTLQCEVS KVYILRLCSW MRSTVEEISK DESWVAVSIL QRNRSPYTIS
0701: SLPLAFRSII TSAMDQINVM IESLQNEAMK SEEIYVQLQG IQESVRLALL NCLLNFAGHL EQIGGQRNLN KSNRESPYFQ NGYLEVEEKT SEPLPGSIVD
0801: PQLQLLMVLS NIGYCKDELA RELYCKYKEI WMQNRSKDEE DSDIRELVIS FARLEEKVLE QYTFAKTNLI RTAAINYFLD GGVQWGAAPA VTGVRDAAVE
0901: LLHTLVAVHA EVFAGCKPLL EKTLGILVEG LIDTFLSLFH ENQDRDLRAL DANGFCQLML ELDYFETILN PYFTHEARES FKTLQGALLD KATECVADST
1001: ETPTHNRRPT RGSDDVFLDD RQQGMTVSPD DLIALAQQYS SELLQSELER TRLNTACFVE STPLDSVPES AKAAHASLRG SVDSPSRNYR GSQHIGSPSF
1101: SRPRRR
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
Arabidopsis Description
SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.