Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G298000.2 | Wheat | nucleus | 97.19 | 96.92 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 96.63 | 96.0 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 83.91 | 89.79 |
| Zm00001d051026_P001 | Maize | cytosol | 9.45 | 87.83 |
| OQU81566 | Sorghum | nucleus | 83.63 | 81.42 |
| Os04t0421900-01 | Rice | plasma membrane | 83.72 | 81.29 |
| Zm00001d025398_P005 | Maize | nucleus | 83.72 | 79.2 |
| Zm00001d003713_P006 | Maize | nucleus | 80.26 | 75.33 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 66.42 | 64.08 |
| VIT_18s0072g00720.t01 | Wine grape | cytosol, plastid | 55.57 | 60.74 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 26.57 | 58.92 |
| Solyc12g056520.1.1 | Tomato | cytosol | 51.64 | 56.5 |
| KRH34989 | Soybean | endoplasmic reticulum | 57.25 | 56.3 |
| KRG91797 | Soybean | cytosol | 56.78 | 55.74 |
| Bra003706.1-P | Field mustard | nucleus | 56.31 | 55.64 |
| CDX68084 | Canola | nucleus | 56.13 | 55.56 |
| CDX85974 | Canola | nucleus | 56.13 | 55.45 |
| CDY13565 | Canola | nucleus | 54.54 | 55.26 |
| AT1G76850.1 | Thale cress | nucleus | 56.13 | 55.05 |
| AT1G21170.2 | Thale cress | nucleus | 55.85 | 54.32 |
| Solyc04g071350.2.1 | Tomato | nucleus | 55.57 | 53.71 |
| PGSC0003DMT400061943 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.92 | 49.3 |
| PGSC0003DMT400027989 | Potato | nucleus | 7.95 | 41.06 |
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 5.52 | 40.97 |
| CDY45950 | Canola | cytosol | 12.44 | 37.78 |
| Bra008282.1-P | Field mustard | cytosol | 40.22 | 37.49 |
| CDY45951 | Canola | extracellular | 4.3 | 28.93 |
| CDY04603 | Canola | cytosol | 2.15 | 23.0 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G316400.1 | EnsemblPlantsGene:TraesCS2B01G316400 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | InterPro:Cullin_repeat-like_dom_sf | InterPro:EXOC2/Sec5 |
| PANTHER:PTHR13043 | PFAM:PF15469 | SEG:seg | SUPFAM:SSF74788 | MapMan:22.6.3.3 | : |
Description
No Description!
Coordinates
chr2B:+:451817257..451832548
Molecular Weight (calculated)
119527.0 Da
IEP (calculated)
6.022
GRAVY (calculated)
-0.461
Length
1069 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDSDVDEDE LLQMALQEQA ARDLSHQRPA GANKPVVNLV RPPANARGGA KARQPSRGGD EDDDSEVEML SISSGDEDGA PARERGPPPP RGGGRAGARR
0101: AASRDDADLD DAEPRSWKRV DEAELARRVR EMREARAAPS IQALDQKAAA AAAARKALSS VQTLPKGVEV LDPLGLGVMD NKSLRLITEA SISSPVSREK
0201: SQGLDPSMRE KVIYSSPRFD PKVFLSWVHK DTSAADLESG ALTLKTDLKG RTQQKKQLVK ENFDCFVSCK TTIDDIESKL RQIEDDPEGA GTSHLYSVTQ
0301: KMSGVANRAF EPLFERQAQA EKIRSVQGML QRFRTLFNLP SAIRGNIRKG EYDLAVREYQ KAKSIVLPSH VGILKRVLEE VEKVMHEFRG MLYKSMEDPH
0401: LDLAELENIV RLLLELEPET DPVWHYLNIQ NGRIHGLFEK CTVDHEVRME ILQNKIRDKV LSDSKWRQLQ QESNKSLEVD SAIGDSFQDD QLSSSFMVEE
0501: ADSLRATYIR RLSAVLIQHV PAFWRLALSV FSGKFAKAAA GNALADSEMN AKSGANKIDD KGAEAKYTNH SLDEVASMVC ATVSVFDTKV QNTFRDFEEC
0601: NILRPFMGDT IKEIAKACQT LEGKDSSPTA VKMLHALHTE MTKLYILRLC SWMRVTTKEV SKHETWVTLS TLERNKSPYA ISCLPLEFRE ITISAMDRIE
0701: LMIFNLRNET AKSYDITRQL QEIHESVRLA FLNSFRDFAG YLGTFGAELA QSRSNKENNH VQNGYMNGTD RESSASMDGG LHKKLLVVLS NIGYCKAELS
0801: DQLYNKYRHI WSPIRDNDER SADMRDLVTS FSGLEDKVLD QYTFAKSNVI RNAAQNYLLD SGIHWGAAPV VKGIRDATLD LLHILVAVHA EVYSGARPLL
0901: EKTMKILVEG LVDIFLSLFY ENKAKDLRML DANGFCQLML ELEYFETVLN TYFSTEAQQA LKSLQESLLE KACESMGEAS ENPVSDDKQV SSVSPDDLLA
1001: LAQQHGSDLL QGELERTRLN IACFMEPTLQ SGSKTSAYSS YQAPAPAQVS SPSFRRQQTN SPIVSRRRR
0101: AASRDDADLD DAEPRSWKRV DEAELARRVR EMREARAAPS IQALDQKAAA AAAARKALSS VQTLPKGVEV LDPLGLGVMD NKSLRLITEA SISSPVSREK
0201: SQGLDPSMRE KVIYSSPRFD PKVFLSWVHK DTSAADLESG ALTLKTDLKG RTQQKKQLVK ENFDCFVSCK TTIDDIESKL RQIEDDPEGA GTSHLYSVTQ
0301: KMSGVANRAF EPLFERQAQA EKIRSVQGML QRFRTLFNLP SAIRGNIRKG EYDLAVREYQ KAKSIVLPSH VGILKRVLEE VEKVMHEFRG MLYKSMEDPH
0401: LDLAELENIV RLLLELEPET DPVWHYLNIQ NGRIHGLFEK CTVDHEVRME ILQNKIRDKV LSDSKWRQLQ QESNKSLEVD SAIGDSFQDD QLSSSFMVEE
0501: ADSLRATYIR RLSAVLIQHV PAFWRLALSV FSGKFAKAAA GNALADSEMN AKSGANKIDD KGAEAKYTNH SLDEVASMVC ATVSVFDTKV QNTFRDFEEC
0601: NILRPFMGDT IKEIAKACQT LEGKDSSPTA VKMLHALHTE MTKLYILRLC SWMRVTTKEV SKHETWVTLS TLERNKSPYA ISCLPLEFRE ITISAMDRIE
0701: LMIFNLRNET AKSYDITRQL QEIHESVRLA FLNSFRDFAG YLGTFGAELA QSRSNKENNH VQNGYMNGTD RESSASMDGG LHKKLLVVLS NIGYCKAELS
0801: DQLYNKYRHI WSPIRDNDER SADMRDLVTS FSGLEDKVLD QYTFAKSNVI RNAAQNYLLD SGIHWGAAPV VKGIRDATLD LLHILVAVHA EVYSGARPLL
0901: EKTMKILVEG LVDIFLSLFY ENKAKDLRML DANGFCQLML ELEYFETVLN TYFSTEAQQA LKSLQESLLE KACESMGEAS ENPVSDDKQV SSVSPDDLLA
1001: LAQQHGSDLL QGELERTRLN IACFMEPTLQ SGSKTSAYSS YQAPAPAQVS SPSFRRQQTN SPIVSRRRR
0001: MSSSDDLDED ELLQMALKEQ SQRDVTYQKP PSANSRKPVT NLVQQPRRQK RAAAPPSKGG AKASRKPSMD EDDESEVELL SISSGDEDEG NDRGRGGGGD
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
Arabidopsis Description
SEC5BExocyst complex component SEC5 [Source:TAIR;Acc:AT1G21170]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.