Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g01710.t01 | |
| VIT_07s0005g00680.t01 | plasma membrane |
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76850.1 | VIT_01s0011g01710.t01 | AT1G10180.1 | 23495664 |
| AT1G76850.1 | VIT_07s0005g00680.t01 | AT4G02350.1 | 24307681 |
| AT1G76850.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34989 | Soybean | endoplasmic reticulum | 73.52 | 66.15 |
| KRG91797 | Soybean | cytosol | 73.52 | 66.02 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 31.19 | 63.28 |
| CDY13565 | Canola | nucleus | 66.16 | 61.33 |
| AT1G21170.2 | Thale cress | nucleus | 68.71 | 61.15 |
| AT1G76850.1 | Thale cress | nucleus | 67.89 | 60.92 |
| CDX85974 | Canola | nucleus | 67.38 | 60.91 |
| CDX68084 | Canola | nucleus | 67.08 | 60.74 |
| Bra003706.1-P | Field mustard | nucleus | 67.18 | 60.72 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 60.94 | 59.66 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 64.62 | 57.04 |
| Os04t0421900-01 | Rice | plasma membrane | 63.39 | 56.31 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 61.04 | 55.69 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 60.74 | 55.57 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 61.04 | 55.48 |
| OQU81566 | Sorghum | nucleus | 61.76 | 55.01 |
| Zm00001d036062_P001 | Maize | cytosol | 9.2 | 51.72 |
| Zm00001d039959_P001 | Maize | cytosol | 8.18 | 47.34 |
| Bra008282.1-P | Field mustard | cytosol | 53.58 | 45.68 |
| CDY45950 | Canola | cytosol | 16.16 | 44.89 |
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 0.61 | 4.17 |
Protein Annotations
| EntrezGene:100241808 | wikigene:100241808 | MapMan:22.6.3.3 | ProteinID:CCB44861 | ProteinID:CCB44861.1 | InterPro:Cullin_repeat-like_dom_sf |
| InterPro:EXOC2/Sec5 | UniProt:F6GY23 | EMBL:FN594968 | GO:GO:0000145 | GO:GO:0001927 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | EntrezGene:LOC100241808 | wikigene:LOC100241808 | PFAM:PF15469 | PANTHER:PTHR13043 |
| SUPFAM:SSF74788 | TIGR:TC52554 | TIGR:TC55241 | UniParc:UPI000210837D | ArrayExpress:VIT_18s0072g00720 | EnsemblPlantsGene:VIT_18s0072g00720 |
| EnsemblPlants:VIT_18s0072g00720.t01 | unigene:Vvi.6547 | RefSeq:XP_002269025 | RefSeq:XP_002269025.2 | : | : |
Description
No Description!
Coordinates
chr18:-:19959518..20011042
Molecular Weight (calculated)
110179.0 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.315
Length
978 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPYQPNQMC FVIKIAHLAR RVREMRETKA VPVAQKIEKK ASAMGIKVLN NLQSFPRGME CIDPLGLGII DNKSLKLITE ASESSPTKVA KDYPDAVLRE
101: KLLYFSEKFD AKMFLSRIHQ ETSAADLEAG ALALKTDLKG RTQQKKQLVK ENFDCFVSCK TTIDDIQSKL KRIEEDPEGS GTSHLFNCIQ GVSSLANRAF
201: EPLFERQAQT EKIRSVQGML QRFRTLFNLP SSIRGSISKG EYDLAVREYR KAKSIALPSH VEILKRVLEE VEKVMHEFKG MLYKSMEDPQ IDLTDLENTV
301: RLLLELEPES DPVWHYLNIQ NHRIRGLLEK CTLDHESRME TLHDGIRERA LSDAKWRQIQ QDSNQSSEVD YSLTPGNTNL LVDSPQVGLT SEEVDALRGK
401: YIRRLTAVLI HHIPAFWKVA LSVFSGKFAK SSQVSAESNI NTSASKTEEK VGDGKYSSHS LDEVAGMIRS TISAYEVKVH NTFRDLEESN ILQPYMMDAI
501: KEIAKACQAF EVKESAPPIA VMALRSLHSE VAKIYILRLC TWMRTTTEEI SKDETWVSVS ILERNKSPYS ISYLPLAFRS IMTSAMDQIN LMIQSLRSEA
601: LKSEDMFMHL QEIQESIRLA FLNCFLHFSG HLENIGGELA QTRSNKENFL QNGYSHEPTE KTSELLPGSV VDPHQQLLIV LSNIGYCKDE LCTELYNKYR
701: HVWLQSRERD EGDSDIRDLV VCFSGLEEKV LAQYTFAKAN LIRSAAVNYL LDAGIQWGAA PAVKGVRDAA VELLHTLVAV HAEVFAGAKP LLDKTLGILV
801: EGLIDTFLSL FHENKTKDLR SLDANGFCQL MLELEYFETI LHPYLTQDAS ESLKSLQGVL LEKATESVTE SVENLGHHRR STRGSEDALA DDRQQVMSVS
901: PDDLIALAQQ FSSELLQAEL ERTRINTACF VESIPLDMVP EPAKAAYASF RGSIDSPSRS FRGTQAVGSP SFSRQRRR
101: KLLYFSEKFD AKMFLSRIHQ ETSAADLEAG ALALKTDLKG RTQQKKQLVK ENFDCFVSCK TTIDDIQSKL KRIEEDPEGS GTSHLFNCIQ GVSSLANRAF
201: EPLFERQAQT EKIRSVQGML QRFRTLFNLP SSIRGSISKG EYDLAVREYR KAKSIALPSH VEILKRVLEE VEKVMHEFKG MLYKSMEDPQ IDLTDLENTV
301: RLLLELEPES DPVWHYLNIQ NHRIRGLLEK CTLDHESRME TLHDGIRERA LSDAKWRQIQ QDSNQSSEVD YSLTPGNTNL LVDSPQVGLT SEEVDALRGK
401: YIRRLTAVLI HHIPAFWKVA LSVFSGKFAK SSQVSAESNI NTSASKTEEK VGDGKYSSHS LDEVAGMIRS TISAYEVKVH NTFRDLEESN ILQPYMMDAI
501: KEIAKACQAF EVKESAPPIA VMALRSLHSE VAKIYILRLC TWMRTTTEEI SKDETWVSVS ILERNKSPYS ISYLPLAFRS IMTSAMDQIN LMIQSLRSEA
601: LKSEDMFMHL QEIQESIRLA FLNCFLHFSG HLENIGGELA QTRSNKENFL QNGYSHEPTE KTSELLPGSV VDPHQQLLIV LSNIGYCKDE LCTELYNKYR
701: HVWLQSRERD EGDSDIRDLV VCFSGLEEKV LAQYTFAKAN LIRSAAVNYL LDAGIQWGAA PAVKGVRDAA VELLHTLVAV HAEVFAGAKP LLDKTLGILV
801: EGLIDTFLSL FHENKTKDLR SLDANGFCQL MLELEYFETI LHPYLTQDAS ESLKSLQGVL LEKATESVTE SVENLGHHRR STRGSEDALA DDRQQVMSVS
901: PDDLIALAQQ FSSELLQAEL ERTRINTACF VESIPLDMVP EPAKAAYASF RGSIDSPSRS FRGTQAVGSP SFSRQRRR
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
Arabidopsis Description
SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.