CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87879
CDX90725
CDY05064
CDY20653
CDY31043
CDY45633
CDY50392	plasma membrane
CDY52982
CDY65634	plasma membrane
CDY67259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76850.1	CDY20653	AT1G10180.1	23495664
AT1G76850.1	CDY31043	AT1G10180.1	23495664
AT1G76850.1	CDX87879	AT1G52240.1	21798944
AT1G76850.1	CDY45633	AT1G52240.1	21798944
AT1G76850.1	CDY52982	AT1G52240.1	21798944
AT1G76850.1	CDY67259	AT1G52240.1	21798944
AT1G76850.1	CDY50392	AT4G02350.1	24307681
AT1G76850.1	CDY65634	AT4G02350.1	24307681
AT1G76850.1	CDX90725	AT4G09570.1	19130088
AT1G76850.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008282.1-P	Field mustard	cytosol	93.18	28.6
CDY13565	Canola	nucleus	67.05	22.37
CDX68084	Canola	nucleus	64.2	20.93
CDX85974	Canola	nucleus	64.2	20.89
AT1G76850.1	Thale cress	nucleus	63.35	20.46
VIT_18s0072g00720.t01	Wine grape	cytosol, plastid	44.89	16.16
Solyc12g056520.1.1	Tomato	cytosol	41.19	14.84
KRH34989	Soybean	endoplasmic reticulum	41.48	13.43
HORVU2Hr1G074320.5	Barley	cytosol, plastid	38.07	13.41
KRG91797	Soybean	cytosol	41.19	13.31
Solyc04g071350.2.1	Tomato	nucleus	40.62	12.93
GSMUA_Achr6P25360_001	Banana	cytosol	40.34	12.82
TraesCS2D01G298000.2	Wheat	nucleus	38.07	12.5
Os04t0421900-01	Rice	plasma membrane	38.92	12.44
TraesCS2B01G316400.1	Wheat	nucleus	37.78	12.44
TraesCS2A01G300100.3	Wheat	nucleus	37.78	12.36
OQU81566	Sorghum	nucleus	37.78	12.11
Zm00001d039959_P001	Maize	cytosol	2.84	5.92
Zm00001d036062_P001	Maize	cytosol	2.27	4.6
CDY45951	Canola	extracellular	1.42	3.14
CDY45948	Canola	cytosol, nucleus, peroxisome	1.14	0.83
PGSC0003DMT400027989	Potato	nucleus	0.0	0.0
CDY04603	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY45950	EnsemblPlantsGene:GSBRNA2T00082950001	GO:A0A078I4Z5	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006893	GO:GO:0008150	InterPro:EXOC2/Sec5
PANTHER:PTHR13043	ProteinID:CDY45950	ProteinID:CDY45950.1	SEG:seg	UniParc:UPI0004EE53E0	UniProt:A0A078I4Z5
MapMan:22.6.3.3	:	:	:	:	:

Description

BnaA02g17760DBnaA02g17760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4Z5]

Coordinates

chrLK032643:+:72046..74125

Molecular Weight (calculated)

39113.6 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.111

Length

352 amino acids

Sequence
(BLAST)

001: MNPRCGRSDT SANKSEEKVT EARFSTHSLE EVAGMIRKGV LKLFSILVNN TFCDFDESCI LRPFMSNAIQ EVSKACQAFE AKDSVPPQFG KVQAEITKIY
101: IQRLCSWMRA STERISKEET WIPVSILERN KSPYAISYLP LAFRSVIVSG MEQINLKQNS SSHSLVVVQA SPELYVVASK SSFSVGLSSV LVFTNDLQTR
201: SSGSPFIGCC TDISMFLGTS VSGFQDDCLS KVKLPNQKIE EMLISVRLAF LNCFLDFAAH LDQIGADLST REDWKNGYSD DQQEVTSANT YGSVVDPHRR
301: FDLQDLIMSF SGLGEKVLEH YTFSKANLIR TAATSYLLDS GIQWGSAPQM IT

Best Arabidopsis Sequence Match ( AT1G76850.1 )
(BLAST)

0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR

Arabidopsis Description

SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.