CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87879
CDX90725
CDY05064
CDY20653
CDY31043
CDY45633
CDY50392	plasma membrane
CDY52982
CDY65634	plasma membrane
CDY67259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76850.1	CDY20653	AT1G10180.1	23495664
AT1G76850.1	CDY31043	AT1G10180.1	23495664
AT1G76850.1	CDX87879	AT1G52240.1	21798944
AT1G76850.1	CDY45633	AT1G52240.1	21798944
AT1G76850.1	CDY52982	AT1G52240.1	21798944
AT1G76850.1	CDY67259	AT1G52240.1	21798944
AT1G76850.1	CDY50392	AT4G02350.1	24307681
AT1G76850.1	CDY65634	AT4G02350.1	24307681
AT1G76850.1	CDX90725	AT4G09570.1	19130088
AT1G76850.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13565	Canola	nucleus	90.66	41.42
Zm00001d036062_P001	Maize	cytosol	14.73	40.8
CDX85974	Canola	nucleus	87.76	39.09
CDX68084	Canola	nucleus	87.55	39.07
AT1G76850.1	Thale cress	nucleus	87.97	38.9
Zm00001d039959_P001	Maize	cytosol	13.49	38.46
Bra008282.1-P	Field mustard	cytosol	85.48	35.92
PGSC0003DMT400027989	Potato	nucleus	13.49	31.4
VIT_18s0072g00720.t01	Wine grape	cytosol, plastid	63.28	31.19
Solyc12g056520.1.1	Tomato	cytosol	60.79	29.99
KRH34989	Soybean	endoplasmic reticulum	64.32	28.52
Solyc04g071350.2.1	Tomato	nucleus	65.35	28.48
KRG91797	Soybean	cytosol	64.32	28.47
HORVU2Hr1G074320.5	Barley	cytosol, plastid	55.81	26.93
TraesCS2D01G298000.2	Wheat	nucleus	59.34	26.68
TraesCS2A01G300100.3	Wheat	nucleus	59.34	26.58
TraesCS2B01G316400.1	Wheat	nucleus	58.92	26.57
Os04t0421900-01	Rice	plasma membrane	60.37	26.43
OQU81566	Sorghum	nucleus	59.75	26.23
GSMUA_Achr6P25360_001	Banana	cytosol	59.96	26.08
CDY04603	Canola	cytosol	0.83	4.0
CDY45951	Canola	extracellular	1.24	3.77
CDY45950	Canola	cytosol	0.83	1.14

Protein Annotations

EnsemblPlants:CDY45948	EnsemblPlantsGene:GSBRNA2T00082948001	GO:A0A078I9V2	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006893	GO:GO:0008150	InterPro:Cullin_repeat-like_dom_sf
InterPro:EXOC2/Sec5	PANTHER:PTHR13043	PFAM:PF15469	ProteinID:CDY45948	ProteinID:CDY45948.1	SEG:seg
SUPFAM:SSF74788	UniParc:UPI0004EE4AC2	UniProt:A0A078I9V2	MapMan:22.6.3.3	:	:

Description

BnaA02g17740DBnaA02g17740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9V2]

Coordinates

chrLK032643:+:67385..70700

Molecular Weight (calculated)

54842.5 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.474

Length

482 amino acids

Sequence
(BLAST)

001: MDEPEVELLS ISSEDDDVER ESDVRERGRA KKEDDGGGTL DGEEPDCWKR VNEAELARRV RDMRESRTAP VVQKLEDKVS EPGKKVVLTS LQSLPRVMEC
101: IDPLKLGIID NKTLRLISES LGSPSKAEKV DNTLGEKLIY FSDHFDPKLF LSRIHQDTSA ADLEAGALGL KSDLKGRNLQ RKQLVKDNFD CFVSCKTTID
201: DIESKLKRIE EDPEGSGTTH VFNCMKSVTS RANLAFEPLF ERQAQAEKIR SVQGMLQRFR TLFNLPSIIR NSISKGEYDL AVREYKKAKS IALPSHVNIL
301: KRVLEEVEKV MLEFKGTLYK TMEDTKIDFT SLENTVRLLL ELEPESDPVW HYINVQNHRI HGLLEKCTYD HEARVETLRN ETRERAISDA KWQQIQQNVV
401: PYSDAASSTE SNEVQVDLQS VEFPSEEIDA LKGRYIKIIT GVLVHHIPAF WKTALSVFSG KFAKVSAILL LIFEHLITKA RL

Best Arabidopsis Sequence Match ( AT1G76850.1 )
(BLAST)

0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR

Arabidopsis Description

SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.