CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89402
KRG91803
KRH14016	plasma membrane
KRH34983
KRH34984
KRH50470
KRH68203	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76850.1	KRG89402	AT1G10180.1	23495664
AT1G76850.1	KRH50470	AT1G10180.1	23495664
AT1G76850.1	KRH14016	AT4G02350.1	24307681
AT1G76850.1	KRH68203	AT4G02350.1	24307681
AT1G76850.1	KRG91803	AT4G09570.1	19130088
AT1G76850.1	KRH34983	AT4G09570.1	19130088
AT1G76850.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91797	Soybean	cytosol	95.58	95.41
VIT_18s0072g00720.t01	Wine grape	cytosol, plastid	66.15	73.52
Solyc04g071350.2.1	Tomato	nucleus	67.25	66.09
Solyc12g056520.1.1	Tomato	cytosol	59.06	65.71
CDY45948	Canola	cytosol, nucleus, peroxisome	28.52	64.32
CDX68084	Canola	nucleus	63.66	64.07
CDX85974	Canola	nucleus	63.29	63.59
Bra003706.1-P	Field mustard	nucleus	63.2	63.49
AT1G76850.1	Thale cress	nucleus	63.11	62.94
CDY13565	Canola	nucleus	60.72	62.56
AT1G21170.2	Thale cress	nucleus	62.74	62.06
GSMUA_Achr6P25360_001	Banana	cytosol	60.63	59.48
TraesCS2D01G298000.2	Wheat	nucleus	56.58	57.37
TraesCS2B01G316400.1	Wheat	nucleus	56.3	57.25
TraesCS2A01G300100.3	Wheat	nucleus	56.58	57.16
Os04t0421900-01	Rice	plasma membrane	57.77	57.04
OQU81566	Sorghum	nucleus	57.41	56.83
HORVU2Hr1G074320.5	Barley	cytosol, plastid	51.7	56.26
Zm00001d036062_P001	Maize	cytosol	7.73	48.28
Zm00001d039959_P001	Maize	cytosol	6.9	44.38
PGSC0003DMT400027989	Potato	nucleus	8.37	43.96
Bra008282.1-P	Field mustard	cytosol	45.91	43.5
CDY45950	Canola	cytosol	13.43	41.48

Protein Annotations

EntrezGene:100790723	MapMan:22.6.3.3	EMBL:ACUP02006646	ncoils:Coil	InterPro:EXOC2/Sec5	EnsemblPlantsGene:GLYMA_10G217200
GO:GO:0000145	GO:GO:0001927	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006893	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	UniProt:K7LKS0
EnsemblPlants:KRH34989	ProteinID:KRH34989	ProteinID:KRH34989.1	PFAM:PF15469	PANTHER:PTHR13043	UniParc:UPI000294F9B3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:44867121..44880722

Molecular Weight (calculated)

121761.0 Da

IEP (calculated)

5.117

GRAVY (calculated)

-0.465

Length

1087 amino acids

Sequence
(BLAST)

0001: MSSDSDEDEL LQMALKEQAQ RDVNYGGKSS SNSRKPVANY VQPLKKPAPP PKQSQGKGRV ADDDDDSEIE MLSISSGDED NVQDPVAASR TKAAAAGRPV
0101: REDDRTWDGE EPSRWKHVDE AELARRVREM RETRSAPAPQ KFVASKFEKE GSAVGRKGLT YLQSFPRGME CVDPLGLGII DNRTLRLITE SAHSSPKTDK
0201: DIQDGNLREK LLYFSENFDA KMFLSRIHSN TSAADLEAGA LALKTDFKSR TEQRKQLVKD NFDCFVSCKT TIDDIESKLR QIEDDPEGSG TSHLFNIIQD
0301: VSLQANRALK PLFERQAQAE KIRTVQGMLQ RFRTLFNLPS TIRGSISKGE YDLAVREYKK AKSIVLPSHI QVGILKRVLE EVEKVMNDFK TMLFKSMEDP
0401: QIDPTNLENT VRLLLDLEPE SDPVWHYLNI QNQRICGLLE KCTLDHEARM ENLHNELRER ALSDARWRQI QEDMNESSDI NNSPIGNTYP AVQSHPSDLT
0501: GEEVDGLRGR YIHRLTAVII HYIPAFWKVA LSVFSGKFAK SSQVPTDSNS NSSANKIEEK AGDGKYSSHS LDEVAAMICS TISLYGVKVT SIFHDLEESN
0601: VLQFYMSEAI EDISKACATL ELKEAAPPIA VASIRTLQSE IIKIYILRLC SWMRASVEEV SKDVTWVIVS ILERNKSPYA ISFLPLTFRS VVASAMDQIN
0701: SMLRSLRNEA TKSEDMFMQL QEIQESVRLA FLNCFLDFAG SLERIGFELG QHRSDEEGSQ LPNGYTHELE NAPSGLRGGV IDPHQQLLIV LSNIGYCKNE
0801: LSCELYDKYR HIWQHSRGKD EGNSDLEYLV NSFSALEAKV LEQYTFAKAN LIRSAAMNYL LHSGIQWGAA PAVKGVRDAA VELLHTLVAV HAEVFAGAKP
0901: LLDKTLGILV EGLIDTFISI FHENEATDLS ALDTNGFCQL MLELEYFETI LNPYFTSDAR DSLKSLQGLL LEKATESVTD AVDNPGHNRR PTRGSEDALA
1001: DDKQQGTTVS PDELISLAQQ YSSEFLQSEL ERTRINTACF AESFPLDSVP EPAKSAYSPF RNSMDSPSRN HRGTYNTGAS SFSRHRH

Best Arabidopsis Sequence Match ( AT1G76850.1 )
(BLAST)

0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR

Arabidopsis Description

SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.