Factsheet for Zm00001d039959_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d009226_P001	plasma membrane
Zm00001d009549_P002
Zm00001d012691_P001
Zm00001d021828_P004
Zm00001d023560_P002
Zm00001d038989_P002
Zm00001d040788_P001	plasma membrane
Zm00001d043383_P001
Zm00001d043889_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76850.1	Zm00001d021828_P004	AT1G10180.1	23495664
AT1G76850.1	Zm00001d009549_P002	AT1G52240.1	21798944
AT1G76850.1	Zm00001d012691_P001	AT1G52240.1	21798944
AT1G76850.1	Zm00001d038989_P002	AT1G52240.1	21798944
AT1G76850.1	Zm00001d043383_P001	AT1G52240.1	21798944
AT1G76850.1	Zm00001d043889_P001	AT1G52240.1	21798944
AT1G76850.1	Zm00001d009226_P001	AT4G02350.1	24307681
AT1G76850.1	Zm00001d040788_P001	AT4G02350.1	24307681
AT1G76850.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT1G76850.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT1G76850.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051026_P001	Maize	cytosol	48.52	71.3
Zm00001d036062_P001	Maize	cytosol	48.52	47.13
Zm00001d043124_P001	Maize	golgi	42.01	20.0
CDY45948	Canola	cytosol, nucleus, peroxisome	38.46	13.49
Zm00001d027566_P001	Maize	cytosol, mitochondrion, peroxisome	13.61	9.75
Zm00001d025398_P005	Maize	nucleus	58.58	8.76
Zm00001d003713_P006	Maize	nucleus	57.99	8.6
VIT_18s0072g00720.t01	Wine grape	cytosol, plastid	47.34	8.18
Solyc12g056520.1.1	Tomato	cytosol	45.56	7.88
CDX68084	Canola	nucleus	45.56	7.13
Bra003706.1-P	Field mustard	nucleus	45.56	7.12
CDX85974	Canola	nucleus	45.56	7.12
CDY13565	Canola	nucleus	44.38	7.11
KRG91797	Soybean	cytosol	44.97	6.98
AT1G76850.1	Thale cress	nucleus	44.97	6.97
KRH34989	Soybean	endoplasmic reticulum	44.38	6.9
Solyc04g071350.2.1	Tomato	nucleus	43.79	6.69
AT1G21170.2	Thale cress	nucleus	43.2	6.64
Bra008282.1-P	Field mustard	cytosol	42.01	6.19
Zm00001d053086_P001	Maize	cytosol, plastid	15.38	5.75
CDY45950	Canola	cytosol	5.92	2.84
PGSC0003DMT400027989	Potato	nucleus	2.96	2.42
Zm00001d039289_P001	Maize	cytosol, golgi, mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d039959_P001	EnsemblPlants:Zm00001d039959_T001	EnsemblPlantsGene:Zm00001d039959	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:NAT12	PANTHER:PTHR11119	PANTHER:PTHR11119:SF28	PFAM:PF08700	ProteinID:ONM30218.1	TMHMM:TMhelix
UniParc:UPI000842F9E9	UniProt:A0A1D6MLY0	MapMan:35.1	:	:	:

Description

Exocyst complex component SEC5A

Coordinates

chr3:-:20751341..20761528

Molecular Weight (calculated)

19230.3 Da

IEP (calculated)

7.245

GRAVY (calculated)

-0.195

Length

169 amino acids

Sequence
(BLAST)

001: MRDKVIYSSP NFDPKVFLSW VHKDTSAADL EAGALTLKTD LKGRTQQKKQ LVKENFDYFV SCKTTIDDIE SKLRQIEEDP EGATIRCYGC CSPLLHVNYV
101: LNTILSLNMA IAFLVALVLD NTVPGGRQER GLYVWSEAEA AMREPTFMKD YELPFKIGRP FRWVKCVGL

Best Arabidopsis Sequence Match ( AT1G76850.1 )
(BLAST)

0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR

Arabidopsis Description

SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.