Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003706.1-P | Field mustard | nucleus | 98.89 | 98.71 |
| CDX85974 | Canola | nucleus | 97.96 | 97.78 |
| CDY13565 | Canola | nucleus | 86.57 | 88.63 |
| AT1G76850.1 | Thale cress | nucleus | 89.07 | 88.26 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 39.07 | 87.55 |
| VIT_18s0072g00720.t01 | Wine grape | cytosol, plastid | 60.74 | 67.08 |
| CDY45951 | Canola | extracellular | 9.81 | 66.67 |
| CDY45950 | Canola | cytosol | 20.93 | 64.2 |
| KRH34989 | Soybean | endoplasmic reticulum | 64.07 | 63.66 |
| KRG91797 | Soybean | cytosol | 63.52 | 62.99 |
| Solyc12g056520.1.1 | Tomato | cytosol | 56.57 | 62.54 |
| Solyc04g071350.2.1 | Tomato | nucleus | 63.06 | 61.57 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 57.78 | 56.32 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 55.74 | 56.16 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 55.56 | 56.13 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 55.65 | 55.85 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 51.3 | 55.46 |
| Os04t0421900-01 | Rice | plasma membrane | 56.39 | 55.31 |
| OQU81566 | Sorghum | nucleus | 56.11 | 55.19 |
| Zm00001d036062_P001 | Maize | cytosol | 7.69 | 47.7 |
| Zm00001d039959_P001 | Maize | cytosol | 7.13 | 45.56 |
| PGSC0003DMT400027989 | Potato | nucleus | 8.7 | 45.41 |
| CDY04603 | Canola | cytosol | 3.52 | 38.0 |
Protein Annotations
| EnsemblPlants:CDX68084 | EnsemblPlantsGene:GSBRNA2T00099322001 | GO:A0A078BWB3 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | InterPro:Cullin_repeat-like_dom_sf |
| InterPro:EXOC2/Sec5 | PANTHER:PTHR13043 | PFAM:PF15469 | ProteinID:CDX68084 | ProteinID:CDX68084.1 | SEG:seg |
| SUPFAM:SSF74788 | UniParc:UPI0004EE051B | MapMan:22.6.3.3 | : | : | : |
Description
BnaA07g21240D
Coordinates
chrLK031787:-:3773515..3780719
Molecular Weight (calculated)
121187.0 Da
IEP (calculated)
5.407
GRAVY (calculated)
-0.485
Length
1080 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSDDEDELL QMALKEQSQR DLTYQKPPSS SSRKPVANLV QQPRQQKPAP PKKSAAARKP SMDDDDESEV ELLSISSGDD DLERDRETGG GGGAGKGRGS
0101: DVRERGGRAK KEDDVAWDGE EPDCWKRVNE AELARRVRDM RESRTAPVVQ KLEDKAPAPG KKVVLTSLQS LPRGMECIDP LKLGIIDNKT LRLITERSGS
0201: PSKSEKVDNT LREKLIYFSD NFDPKLFLSR IHQHTSAADL EAGALGLKSD LKGRNLQKKQ LVKDNFDCFV SCKTTIDDIE AKLKRIESDP EGSGTTHLFN
0301: CMKSVTSRAT RAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRNSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKIMLE FKGTLYKSME
0401: DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVENHRIHGL LEKCTYDHEA RVEILRNETH ERAISDAKWQ QIQQNVVPYS DAASSNENNE VQVDPQSVEF
0501: PSEEIDALKG RYIKRLTAVL VHHIPLFWKT AISVFSGKFA KSSQVTDSSA NKAEEKVTEA RYSTHSLEEV AAMIRKTISV YEAKVHSTFC DFDESCILRP
0601: FMSDAINEVS KACQSFETKD SAPHSAVVAL RKVQAEITKI YIQRLCSWMR ASTEGISKEE TWVPVSILER NRSPYAISYL PLAFRSVIVS GMEQINLMIL
0701: SVKGEAAKSE DMFAQIEEIL ISVRMAFLNC FLDFAAHLEQ IAADLSQSTS TREDWKNGYS DDQQEVPSAN TYGSVVDPHR RLLMVLSNIG YCKDELASEL
0801: YNKFKYTWLQ SRDNDEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF AGAKPLLDKI
0901: LGVLIEGLVD TFLSLVEENR TNDLSSIDAN GFCQLMFELE YFETVLNLYF TSDATASLKT LQGTVLEIAI ESISEAVETT PGHNRRPTRG SEDTVSDDRQ
1001: GSSISADDLL ALTKQYSSEL LQTEMERTRL NTACFAESVP VEPTPTLPKT AYRVSMDSPS RNYRGSQSSG SPVHARPRRR
0101: DVRERGGRAK KEDDVAWDGE EPDCWKRVNE AELARRVRDM RESRTAPVVQ KLEDKAPAPG KKVVLTSLQS LPRGMECIDP LKLGIIDNKT LRLITERSGS
0201: PSKSEKVDNT LREKLIYFSD NFDPKLFLSR IHQHTSAADL EAGALGLKSD LKGRNLQKKQ LVKDNFDCFV SCKTTIDDIE AKLKRIESDP EGSGTTHLFN
0301: CMKSVTSRAT RAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRNSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKIMLE FKGTLYKSME
0401: DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVENHRIHGL LEKCTYDHEA RVEILRNETH ERAISDAKWQ QIQQNVVPYS DAASSNENNE VQVDPQSVEF
0501: PSEEIDALKG RYIKRLTAVL VHHIPLFWKT AISVFSGKFA KSSQVTDSSA NKAEEKVTEA RYSTHSLEEV AAMIRKTISV YEAKVHSTFC DFDESCILRP
0601: FMSDAINEVS KACQSFETKD SAPHSAVVAL RKVQAEITKI YIQRLCSWMR ASTEGISKEE TWVPVSILER NRSPYAISYL PLAFRSVIVS GMEQINLMIL
0701: SVKGEAAKSE DMFAQIEEIL ISVRMAFLNC FLDFAAHLEQ IAADLSQSTS TREDWKNGYS DDQQEVPSAN TYGSVVDPHR RLLMVLSNIG YCKDELASEL
0801: YNKFKYTWLQ SRDNDEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF AGAKPLLDKI
0901: LGVLIEGLVD TFLSLVEENR TNDLSSIDAN GFCQLMFELE YFETVLNLYF TSDATASLKT LQGTVLEIAI ESISEAVETT PGHNRRPTRG SEDTVSDDRQ
1001: GSSISADDLL ALTKQYSSEL LQTEMERTRL NTACFAESVP VEPTPTLPKT AYRVSMDSPS RNYRGSQSSG SPVHARPRRR
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
Arabidopsis Description
SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.