Factsheet for Bra003706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018457.1-P
Bra018558.1-P	plasma membrane
Bra018956.1-P
Bra030396.1-P
Bra036274.1-P	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76850.1	Bra018457.1-P	AT1G10180.1	23495664
AT1G76850.1	Bra018956.1-P	AT1G52240.1	21798944
AT1G76850.1	Bra030396.1-P	AT1G52240.1	21798944
AT1G76850.1	Bra018558.1-P	AT4G02350.1	24307681
AT1G76850.1	Bra036274.1-P	AT4G02350.1	24307681

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68084	Canola	nucleus	98.71	98.89
AT1G76850.1	Thale cress	nucleus	89.19	88.53
VIT_18s0072g00720.t01	Wine grape	cytosol, plastid	60.72	67.18
KRH34989	Soybean	endoplasmic reticulum	63.49	63.2
Solyc12g056520.1.1	Tomato	cytosol	56.47	62.54
KRG91797	Soybean	cytosol	62.94	62.53
Bra008282.1-P	Field mustard	cytosol	65.53	61.81
Solyc04g071350.2.1	Tomato	nucleus	62.94	61.57
GSMUA_Achr6P25360_001	Banana	cytosol	57.76	56.41
TraesCS2D01G298000.2	Wheat	nucleus	55.82	56.34
TraesCS2B01G316400.1	Wheat	nucleus	55.64	56.31
TraesCS2A01G300100.3	Wheat	nucleus	55.73	56.04
HORVU2Hr1G074320.5	Barley	cytosol, plastid	51.39	55.66
Os04t0421900-01	Rice	plasma membrane	56.47	55.49
OQU81566	Sorghum	nucleus	56.1	55.28
Zm00001d036062_P001	Maize	cytosol	7.67	47.7
PGSC0003DMT400027989	Potato	nucleus	8.78	45.89
Zm00001d039959_P001	Maize	cytosol	7.12	45.56

Protein Annotations

EnsemblPlants:Bra003706.1	EnsemblPlants:Bra003706.1-P	EnsemblPlantsGene:Bra003706	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006893	GO:GO:0008150	InterPro:Cullin_repeat-like_dom_sf
InterPro:EXOC2/Sec5	PANTHER:PTHR13043	PFAM:PF15469	SEG:seg	SUPFAM:SSF74788	UniParc:UPI000254154E
UniProt:M4CHM3	MapMan:22.6.3.3	:	:	:	:

Description

AT1G76850 (E=0.0) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5)

Coordinates

chrA07:-:14608975..14615063

Molecular Weight (calculated)

121287.0 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.485

Length

1082 amino acids

Sequence
(BLAST)

0001: MSSDDEDELL QMALKEQSQR DLTYQKPPSS SSRKPVANLV QQPRQQKPAP PKKSAAAAAR KPSMDDDDES EVELLSISSG DDDLERDRET GGGGGAGKGR
0101: GSDVRERGGR AKKEDDGAWD GEEPDCWKRV NEAELARRVR DMRESRTAPV VQKLEDKAPA PGKKVVLTSL QSLPRGMECI DPLKLGIIDN KTLRLITERS
0201: GSPSKSEKVD NTLREKLIYF SDNFDPKLFL SRIHQHTSAA DLEAGALGLK SDLKGRNLQK KQLVKDNFDC FVSCKTTIDD IEAKLKRIES DPEGSGTTHL
0301: FNCMKSVTSR ATRAFEPLFE RQAQAEKIRS VQGMLQRFRT LFNLPSIIRN SISKGEYDLA VREYKKAKSI ALPSHVNILK RVLEEVEKIM LEFKGTLYKS
0401: MEDPKIDFTS LENTVRLLLE LEPESDPVWH YLNVENHRIH GLLEKCTYDH EARVEILRNE THERAISDAK WQQIQQNVVP YSDAASSNEN NEVQVDPQSV
0501: EFPSEEIDAL KGRYIKRLTA VLVHHIPLFW KTAISVFSGK FAKSSQVTDS SANKAEEKVT EARYSTHSLE EVAAMIRKTI SVYEAKVHST FCDFDESCIL
0601: RPFMSDAINE VSKACQSFET KDSAPHSAVV ALRKVQAEIT KIYIQRLCSW MRASTEGISK EETWVPVSIL ERNRSPYAIS YLPLAFRSVI VSGMEQINLM
0701: ILSVKGEAAK SEDMFAQIEE ILISVRMAFL NCFLDFAAHL EQIAADLSQS TSTREDWKNG YSDDQQEVPS ANTYGSVVDP HRRLLMVLSN IGYCKDELAS
0801: ELYNKFKYTW LQSRDNDEDS SDLQDLIMSF SGLGEKVLEH YTFAKANLIR TAATNYLLDS GIQWGSAPQV KGIRDAAVEL LHTLVAVHAE VFAGAKPLLD
0901: KILGVLIEGL VDTFLSLVEE NRTNDLSSID ANGFCQLMFE LEYFETVLNL YFTSDATASL KTLQGTVLEI AIESISEAVE TTPGHNRRPT RGSEDTVSDD
1001: RQGSSISADD LLALTKQYSS ELLQTEMERT RLNTACFAES VPVEPTPTLP KTAYRVSMDS PSRNYRGSQS SGSPVHARPR RR

Best Arabidopsis Sequence Match ( AT1G76850.1 )
(BLAST)

0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR

Arabidopsis Description

SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.