Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G300100.3 | plasma membrane |
| TraesCS2B01G316400.1 | plasma membrane |
| TraesCS2D01G298000.2 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10380.1 | TraesCS2A01G300100.3 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | TraesCS2B01G316400.1 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | TraesCS2D01G298000.2 | AT1G76850.1 | 24307681 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G061610.1 | Barley | cytosol | 29.79 | 97.67 |
| TraesCS7A01G284500.1 | Wheat | cytosol | 92.91 | 37.32 |
| Os08t0318500-01 | Rice | plasma membrane | 87.47 | 34.97 |
| EER99853 | Sorghum | cytosol | 83.45 | 33.56 |
| Zm00001d022502_P003 | Maize | cytosol | 82.74 | 32.74 |
| GSMUA_Achr3P23140_001 | Banana | cytosol | 64.54 | 32.54 |
| KRH34813 | Soybean | cytosol | 62.41 | 24.77 |
| KRG91961 | Soybean | endoplasmic reticulum | 62.17 | 24.69 |
| AT3G10380.1 | Thale cress | cytosol | 60.05 | 24.12 |
| CDY08608 | Canola | nucleus | 58.87 | 23.6 |
| CDY56705 | Canola | cytosol | 59.81 | 23.47 |
| Solyc11g008340.1.1 | Tomato | nucleus | 63.12 | 23.36 |
| CDY00928 | Canola | cytosol | 58.39 | 23.08 |
| CDY41338 | Canola | nucleus | 58.87 | 23.08 |
| CDX73930 | Canola | cytosol | 57.92 | 23.03 |
| CDY00666 | Canola | cytosol | 57.68 | 22.93 |
| Bra029834.1-P | Field mustard | cytosol | 58.63 | 22.5 |
| Bra001356.1-P | Field mustard | cytosol | 53.66 | 21.16 |
| TraesCS7B01G181500.1 | Wheat | cytosol | 1.65 | 1.87 |
| VIT_13s0019g04810.t01 | Wine grape | cytosol | 0.24 | 1.16 |
| GSMUA_Achr3P23130_001 | Banana | cytosol | 0.24 | 0.44 |
| HORVU7Hr1G061620.1 | Barley | plasma membrane | 0.24 | 0.36 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G282100.6 | EnsemblPlantsGene:TraesCS7D01G282100 | PANTHER:PTHR14146 | MapMan:22.6.3.5 | : | : |
Description
No Description!
Coordinates
chr7D:+:285241045..285261603
Molecular Weight (calculated)
47574.2 Da
IEP (calculated)
4.667
GRAVY (calculated)
-0.051
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGGWLAGCS NLFLKFSSLH IRTTLLCRLA GPAAFRPRVN ATSVYSSLVE NGRPVLQGLL AVDIIAKEVL GWVQLMPIYA AELVEYVRTF LERTHERCRA
101: SYMEAVLEKQ SYILLSRSDV ESLMCLDPAN ASLQNSFGQL DNDIPDAGIE VEIELSDLLL DMCPIKQENL IHDDQKLILL ASLSDSLEYL ADSVERLGES
201: FISPSTISEN KSDIHQSHHT RTTSAIPKSL ASLANEYRRL ATDCVRVLRL EMQLETIYHM QEMTKREYVE DQDAEDPDDF IISLTTQIAR RDEEMAPYIA
301: ESKRNYVFGG ISSVAANASI KALALMKSIN LLGVQQICRN SIALEQALAA IPSIDSEAVQ QRLDRVRTFY ELLNLPFESL LGFIAEQEYI FSAKEYLSIL
401: KVNVPGREIP MDAERRISQI LSH
101: SYMEAVLEKQ SYILLSRSDV ESLMCLDPAN ASLQNSFGQL DNDIPDAGIE VEIELSDLLL DMCPIKQENL IHDDQKLILL ASLSDSLEYL ADSVERLGES
201: FISPSTISEN KSDIHQSHHT RTTSAIPKSL ASLANEYRRL ATDCVRVLRL EMQLETIYHM QEMTKREYVE DQDAEDPDDF IISLTTQIAR RDEEMAPYIA
301: ESKRNYVFGG ISSVAANASI KALALMKSIN LLGVQQICRN SIALEQALAA IPSIDSEAVQ QRLDRVRTFY ELLNLPFESL LGFIAEQEYI FSAKEYLSIL
401: KVNVPGREIP MDAERRISQI LSH
0001: MGIFNGLPVP SDKTYLREEL ARIDESWAAA RFDSLPHVVH ILTSKDREAD IHILKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKIGDL
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
Arabidopsis Description
SEC8SEC8 [Source:UniProtKB/TrEMBL;Acc:A0A178VA38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.