CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91797	plasma membrane
KRH34989	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10380.1	KRG91797	AT1G76850.1	24307681
AT3G10380.1	KRH34989	AT1G76850.1	24307681

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34813	Soybean	cytosol	97.93	97.84
VIT_13s0019g04770.t01	Wine grape	cytosol	74.46	77.52
AT3G10380.1	Thale cress	cytosol	73.52	74.36
CDY08608	Canola	nucleus	72.68	73.36
CDY00928	Canola	cytosol	73.24	72.9
CDY56705	Canola	cytosol	72.49	71.61
GSMUA_Achr3P23130_001	Banana	cytosol	15.21	71.37
HORVU7Hr1G061610.1	Barley	cytosol	8.64	71.32
CDY41338	Canola	nucleus	71.92	70.99
CDX73930	Canola	cytosol	70.89	70.96
CDY00666	Canola	cytosol	70.89	70.96
Solyc11g008340.1.1	Tomato	nucleus	75.77	70.6
Bra029834.1-P	Field mustard	cytosol	73.05	70.6
Bra001356.1-P	Field mustard	cytosol	68.83	68.31
HORVU7Hr1G061620.1	Barley	plasma membrane	17.18	65.59
TraesCS7A01G284500.1	Wheat	cytosol	63.0	63.72
EER99853	Sorghum	cytosol	62.72	63.5
Os08t0318500-01	Rice	plasma membrane	63.0	63.42
Zm00001d022502_P003	Maize	cytosol	62.82	62.58
TraesCS7D01G282100.6	Wheat	plastid	24.69	62.17
TraesCS7B01G181500.1	Wheat	cytosol	21.78	62.03
GSMUA_Achr3P23140_001	Banana	cytosol	48.36	61.38
HORVU7Hr1G061640.1	Barley	cytosol	15.21	61.36

Protein Annotations

EntrezGene:100777077	MapMan:22.6.3.5	EMBL:ACUP02012720	EnsemblPlantsGene:GLYMA_20G182800	GO:GO:0000145	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006612	GO:GO:0006810	GO:GO:0006887
GO:GO:0006893	GO:GO:0006903	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
UniProt:I1NHI4	EnsemblPlants:KRG91961	ProteinID:KRG91961	ProteinID:KRG91961.1	PFAM:PF04048	PANTHER:PTHR14146
InterPro:Sec8_exocyst	UniParc:UPI000233DB69	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:42069733..42098566

Molecular Weight (calculated)

118139.0 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.234

Length

1065 amino acids

Sequence
(BLAST)

0001: MGIFDELPLP SEKAYLREDL SRIDESWVAA RFDSLPHVVH ILTSKDRDAA AQFLKEQSDI IEEVVDEVVH SYHSGFNRAI QNYSQILKLF SESTESISVL
0101: KVDLGEAKRR LSARNKQLHQ LWYRSVTLRH IISLLDQIED IAKVPARIEK LIAEKQFYAA VQLHVQSILM LERGLQTVGA LQDVRSELTK LRGVLFYKIL
0201: EDLHAHLYNK GEYSAAGSTL LENDDELPTT TAVALAAHNS QPLSRRTRSL KGDNQNSLQI DGSYRPASMD GGSFDGHDEA DSNEEATLDG NMATARINGN
0301: DIPKDSNNAL RQMPTWLSNS TPDEFLETIR KSDAPLHVKY LQTMVECLCM LGKVAAAGAI ICQRLRPTLH EIITSKIKAH AELLNSSRSI GQGSRTGTGN
0401: LHFIKGQLES YQLPKQKHKN GISIAGTLLA VSPVSPLMAP GGKAQVAAKE LLDSILDAVV RIFENHVIVG ELLEAKASQH ADLNTPKSLP VDVNWSPDSE
0501: ASQVTGGYSI GFSLTVLQSE CQQLICEILR ATPEAASADA AVQTARLASK VPSKDKRDGS EDGLTFAFRF TDATISVPNQ GVDLVRQGWS RKGPNVLQEG
0601: YGSAAVLPEE GIYLAASIYR PVLQFTDKVA SMLPTKYSQL GNDGLLAFVE NFVKDHFLPT MFVDYRKGVQ QAISSPAAFR PRAHVATTYT SSIEKGRPVL
0701: QGLLAIDHLT KEVLGWARAM PKFSNDLVKY VQTFLERTYE RCRTAYMEAV LEKQSYMLIG RHDIEKLMRI DPSSAYLPNL LGQLNVESNS SDAETIEAEL
0801: ELGELLLNLR PIKQENLIHD DNKLILLASL SDSLEYVADS IERLGQTTQR ASNHVGGKYH HSRSDSAPTR SLASFAQDYR KLAIDCLKVL RIEMQLETVF
0901: HMQEMANTEY LDDQDAEEPD DFIISLTAQI TRRDEEMAPF ISNAKRNYIF GGICGVAANA SVKALADMKS INLFGVQQIC RNAIALEQAL AAIPSINSEA
1001: VQQRLDRVRT YYELLNMPFE ALVAFITEHI HLFTPAEYAK LLNVQVPGRE VPPDAQDRLS EILSM

Best Arabidopsis Sequence Match ( AT3G10380.1 )
(BLAST)

0001: MGIFNGLPVP SDKTYLREEL ARIDESWAAA RFDSLPHVVH ILTSKDREAD IHILKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKIGDL
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH

Arabidopsis Description

SEC8SEC8 [Source:UniProtKB/TrEMBL;Acc:A0A178VA38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.