Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g071350.2.1 | plasma membrane |
| Solyc12g056520.1.1 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10380.1 | Solyc04g071350.2.1 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | Solyc12g056520.1.1 | AT1G76850.1 | 24307681 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g04770.t01 | Wine grape | cytosol | 69.29 | 77.42 |
| KRH34813 | Soybean | cytosol | 70.69 | 75.8 |
| KRG91961 | Soybean | endoplasmic reticulum | 70.6 | 75.77 |
| HORVU7Hr1G061610.1 | Barley | cytosol | 8.4 | 74.42 |
| AT3G10380.1 | Thale cress | cytosol | 67.19 | 72.93 |
| GSMUA_Achr3P23130_001 | Banana | cytosol | 14.35 | 72.25 |
| CDY08608 | Canola | nucleus | 65.79 | 71.28 |
| CDY00928 | Canola | cytosol | 66.05 | 70.56 |
| CDY56705 | Canola | cytosol | 65.97 | 69.94 |
| CDX73930 | Canola | cytosol | 64.57 | 69.36 |
| CDY41338 | Canola | nucleus | 65.35 | 69.23 |
| CDY00666 | Canola | cytosol | 64.39 | 69.17 |
| Bra029834.1-P | Field mustard | cytosol | 66.14 | 68.6 |
| HORVU7Hr1G061620.1 | Barley | plasma membrane | 16.45 | 67.38 |
| Bra001356.1-P | Field mustard | cytosol | 63.08 | 67.19 |
| EER99853 | Sorghum | cytosol | 59.23 | 64.35 |
| TraesCS7A01G284500.1 | Wheat | cytosol | 59.06 | 64.1 |
| Os08t0318500-01 | Rice | plasma membrane | 59.32 | 64.08 |
| Zm00001d022502_P003 | Maize | cytosol | 59.58 | 63.7 |
| TraesCS7B01G181500.1 | Wheat | cytosol | 20.73 | 63.37 |
| TraesCS7D01G282100.6 | Wheat | plastid | 23.36 | 63.12 |
| GSMUA_Achr3P23140_001 | Banana | cytosol | 44.97 | 61.26 |
| HORVU7Hr1G061640.1 | Barley | cytosol | 14.0 | 60.61 |
Protein Annotations
| MapMan:22.6.3.5 | GO:GO:0000003 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006612 |
| GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006893 | GO:GO:0006903 | GO:GO:0006904 | GO:GO:0007154 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009791 |
| GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0048354 |
| GO:GO:0060321 | GO:GO:0070062 | UniProt:K4D594 | PFAM:PF04048 | PANTHER:PTHR14146 | InterPro:Sec8_exocyst |
| EnsemblPlantsGene:Solyc11g008340.1 | EnsemblPlants:Solyc11g008340.1.1 | UniParc:UPI000276A8CD | SEG:seg | : | : |
Description
Exocyst complex component SEC8 [Source:Projected from Arabidopsis thaliana (AT3G10380) UniProtKB/Swiss-Prot;Acc:Q93YU5]
Coordinates
chr11:+:2532878..2550743
Molecular Weight (calculated)
126827.0 Da
IEP (calculated)
5.735
GRAVY (calculated)
-0.209
Length
1143 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAIAKNFNQN SYILFIDSAP VWSSSPHPHP YPTHPTHPTY PSTPYQSFHC CLINLVLVLF LRSEQYPSLY IEMGKFDLLP IPKDKSYLRE ELARVDENWA
0101: AARFDSLPHV VRILTSKDRE GDVQVLKEQS EIIEEVVDEV VHAYHGGFNK AIQNYSQILR LFSESTQSIG VLKGDLAEAK KLLGARNKQL HQLWYRSVTL
0201: RHIISLLDQI EGIAKVPARI EKLINEKQFY AAVQLHVQSA LMLEREGLQT VGALQDVRSE LTKLRGVLFY KVLEDLHAHL YNKGEYSSTL FSISERDDEV
0301: PTTVAVPLSM NNSQPLSRRT RLLKGDNQFG SFGAGDGSHK TSSIDGSSLV EGHDDDGEDT VTDGNPTSSR INGIDGASKD VKIITHQVLT WLSDSTPDEF
0401: VEAIRKTDAP LHVKYLQTMV ECLCMLGKVA AAGAIICQRL RPTIHEIITT RIKAHAENAS RPRIGQAAQA AITGLHYLKG QLESFQSSKQ KHQNGIYLAV
0501: LLAVSPVSPV MAPTGTAQAA AKELLDSTLD AVVHIFENHV IVGELLESKC SQQIDLNTPK SMPTDISWNP DSDASHATGG YNIGFSLTVL QSECQQLICE
0601: ILRATPEAAS ADAAVQTARL ASKAPSKEKR DGSEDGLTFA FRFTDATVSI SNQGVDLIRQ GWGKRGSNVL QEGYGTSTIL PEQGIYLAAS IYRPVLQFTD
0701: KVASMLPQKY SQLGNDGLLA FVENFVKDHF LPAMFVDYRK AVQQAISSPA AFRPRANAVT SYTPLIEKGR PILQGLLAID FLAKEVLGWA QAMPKFAVAL
0801: VNYVQTFLER TYERCRTSYM EAVLEKQSYM LIGRHDIENL MQRDPASACL PCSTGELNTE YGAANGENSE VEMEISDALL NLRPIRQENL IRDDNKLILL
0901: ASLSDSLEYI ADSIERLGKI CHSTSNQVED NGGQKAPKHS RTSSMPPKDL ASFAEEYRKL AIDCLKVLRV EMQLETIFHL QEMTSKEFLD DQDAEEPDDY
1001: IISITSLITR RDEEMAPFVA GSRRNYIFGG ISSVASNGSI KALADLKSIN LFGVQQICRN SIALEQALAA IPSIDGEAVQ LRLDRVRTYY ELLNMPFEAL
1101: LAFIAEHENL FSFAEYSHLL KVQVPGREIP ADAHDRVAEV LPR
0101: AARFDSLPHV VRILTSKDRE GDVQVLKEQS EIIEEVVDEV VHAYHGGFNK AIQNYSQILR LFSESTQSIG VLKGDLAEAK KLLGARNKQL HQLWYRSVTL
0201: RHIISLLDQI EGIAKVPARI EKLINEKQFY AAVQLHVQSA LMLEREGLQT VGALQDVRSE LTKLRGVLFY KVLEDLHAHL YNKGEYSSTL FSISERDDEV
0301: PTTVAVPLSM NNSQPLSRRT RLLKGDNQFG SFGAGDGSHK TSSIDGSSLV EGHDDDGEDT VTDGNPTSSR INGIDGASKD VKIITHQVLT WLSDSTPDEF
0401: VEAIRKTDAP LHVKYLQTMV ECLCMLGKVA AAGAIICQRL RPTIHEIITT RIKAHAENAS RPRIGQAAQA AITGLHYLKG QLESFQSSKQ KHQNGIYLAV
0501: LLAVSPVSPV MAPTGTAQAA AKELLDSTLD AVVHIFENHV IVGELLESKC SQQIDLNTPK SMPTDISWNP DSDASHATGG YNIGFSLTVL QSECQQLICE
0601: ILRATPEAAS ADAAVQTARL ASKAPSKEKR DGSEDGLTFA FRFTDATVSI SNQGVDLIRQ GWGKRGSNVL QEGYGTSTIL PEQGIYLAAS IYRPVLQFTD
0701: KVASMLPQKY SQLGNDGLLA FVENFVKDHF LPAMFVDYRK AVQQAISSPA AFRPRANAVT SYTPLIEKGR PILQGLLAID FLAKEVLGWA QAMPKFAVAL
0801: VNYVQTFLER TYERCRTSYM EAVLEKQSYM LIGRHDIENL MQRDPASACL PCSTGELNTE YGAANGENSE VEMEISDALL NLRPIRQENL IRDDNKLILL
0901: ASLSDSLEYI ADSIERLGKI CHSTSNQVED NGGQKAPKHS RTSSMPPKDL ASFAEEYRKL AIDCLKVLRV EMQLETIFHL QEMTSKEFLD DQDAEEPDDY
1001: IISITSLITR RDEEMAPFVA GSRRNYIFGG ISSVASNGSI KALADLKSIN LFGVQQICRN SIALEQALAA IPSIDGEAVQ LRLDRVRTYY ELLNMPFEAL
1101: LAFIAEHENL FSFAEYSHLL KVQVPGREIP ADAHDRVAEV LPR
0001: MGIFNGLPVP SDKTYLREEL ARIDESWAAA RFDSLPHVVH ILTSKDREAD IHILKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKIGDL
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
Arabidopsis Description
SEC8SEC8 [Source:UniProtKB/TrEMBL;Acc:A0A178VA38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.