Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10380.1 | CDX68084 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDX85974 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDY13565 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDY45948 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDY45950 | AT1G76850.1 | 24307681 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41338 | Canola | nucleus | 98.05 | 97.96 |
| CDY08608 | Canola | nucleus | 90.91 | 92.89 |
| AT3G10380.1 | Thale cress | cytosol | 90.26 | 92.4 |
| CDY00928 | Canola | cytosol | 91.19 | 91.87 |
| CDX73930 | Canola | cytosol | 88.96 | 90.13 |
| CDY00666 | Canola | cytosol | 88.5 | 89.66 |
| KRH34813 | Soybean | cytosol | 71.8 | 72.61 |
| KRG91961 | Soybean | endoplasmic reticulum | 71.61 | 72.49 |
| VIT_13s0019g04770.t01 | Wine grape | cytosol | 67.53 | 71.16 |
| HORVU7Hr1G061610.1 | Barley | cytosol | 8.35 | 69.77 |
| GSMUA_Achr3P23130_001 | Banana | cytosol | 14.19 | 67.4 |
| Solyc11g008340.1.1 | Tomato | nucleus | 69.94 | 65.97 |
| HORVU7Hr1G061620.1 | Barley | plasma membrane | 16.23 | 62.72 |
| TraesCS7B01G181500.1 | Wheat | cytosol | 21.06 | 60.7 |
| Os08t0318500-01 | Rice | plasma membrane | 58.91 | 60.02 |
| TraesCS7A01G284500.1 | Wheat | cytosol | 58.44 | 59.83 |
| TraesCS7D01G282100.6 | Wheat | plastid | 23.47 | 59.81 |
| EER99853 | Sorghum | cytosol | 57.98 | 59.41 |
| Zm00001d022502_P003 | Maize | cytosol | 58.35 | 58.84 |
| GSMUA_Achr3P23140_001 | Banana | cytosol | 44.99 | 57.81 |
| HORVU7Hr1G061640.1 | Barley | cytosol | 14.1 | 57.58 |
Protein Annotations
| EnsemblPlants:CDY56705 | EnsemblPlantsGene:GSBRNA2T00019939001 | GO:A0A078J0X5 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | InterPro:Sec8_exocyst | PANTHER:PTHR14146 | PFAM:PF04048 | ProteinID:CDY56705 | ProteinID:CDY56705.1 |
| SEG:seg | UniParc:UPI0004EF3C12 | UniProt:A0A078J0X5 | MapMan:22.6.3.5 | : | : |
Description
BnaC01g38640DBnaC01g38640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0X5]
Coordinates
chrLK033513:+:4075..12719
Molecular Weight (calculated)
120073.0 Da
IEP (calculated)
6.012
GRAVY (calculated)
-0.254
Length
1078 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGIFDGLPVP SDKSYLRDEL ARIDESWAVA RFDSLPHVVH ILTSKDRATD VLLLKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKLGDL
0101: KHDLAEAKRS LGTRNKQLHQ LWYRSVTLRH IIALLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDDVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSHRTS SIEEGSSFDG HDEDSVEHDE ATDSKLLSHQ
0301: LPPWLSDSTP DEFIEAVRKS DDPLHVKYLQ TLVQCLCMLG KVAAAGAIIC QKLRPTIHEI IISKIKAHME TRNLSKFACI QGDQTVAAGL HFVKGQPEAY
0401: RLSKEKPQNG ISNSGTHLAV SPVSPLMVPG GKAQAAAKDL LDSILDTIVK IFENHVVIGE LFELKASQHD INTPKSLPTN VNWNIDSEAS QVTGGYTISY
0501: PLTVLQSECQ QLICEILRAT PEAASADAAA QTAKGAKKAS KKDKRQRYVF IRLGITIYGH RQYREDIRAE IYSDDLISRN APEDGLTFTF RFTDATISIS
0601: NQGADLIRQG WGMKAPNSSQ EGYGSAAVLP EQGIYLAASI YRPVLQFTDK ITSMLPKKHS QLVIDGLLTF TENFVKDHLL PTMFVDYRKG VQQAISSAAA
0701: FRPRAHTTTY TPTVEKGRPI LQGLLAIDLL AKEVLGWAQA MPKFATDLVK YVQTFLERTF ERCRTSYMEA VLEKLSYRLI GRHDIEKLMR LDPASACLPA
0801: LLGHSVSHSE AVGSDVELCE LFLSLPSIKQ DNLIRDDNKL ILLASLSDSL EYVADSIERL GQAVPRAASQ SEDNSRNQAT SPRNLASFAD EYRKLATDCL
0901: KVLRVEMQLE TVFHLQEMTN REYLEDEDAE EPDDFVISLT SQITRRDEGM APFISGEKRN YVFGGICGIA ANASIKALAD MRSINLFGVQ QICRNTIALE
1001: QAMAAIPYID GESVQQNLDR VRTYFELLNM PFEALLAFIA EHDQMFTPTE YSNLLKVNVP GRDTPTDAQS RLSEILSH
0101: KHDLAEAKRS LGTRNKQLHQ LWYRSVTLRH IIALLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDDVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSHRTS SIEEGSSFDG HDEDSVEHDE ATDSKLLSHQ
0301: LPPWLSDSTP DEFIEAVRKS DDPLHVKYLQ TLVQCLCMLG KVAAAGAIIC QKLRPTIHEI IISKIKAHME TRNLSKFACI QGDQTVAAGL HFVKGQPEAY
0401: RLSKEKPQNG ISNSGTHLAV SPVSPLMVPG GKAQAAAKDL LDSILDTIVK IFENHVVIGE LFELKASQHD INTPKSLPTN VNWNIDSEAS QVTGGYTISY
0501: PLTVLQSECQ QLICEILRAT PEAASADAAA QTAKGAKKAS KKDKRQRYVF IRLGITIYGH RQYREDIRAE IYSDDLISRN APEDGLTFTF RFTDATISIS
0601: NQGADLIRQG WGMKAPNSSQ EGYGSAAVLP EQGIYLAASI YRPVLQFTDK ITSMLPKKHS QLVIDGLLTF TENFVKDHLL PTMFVDYRKG VQQAISSAAA
0701: FRPRAHTTTY TPTVEKGRPI LQGLLAIDLL AKEVLGWAQA MPKFATDLVK YVQTFLERTF ERCRTSYMEA VLEKLSYRLI GRHDIEKLMR LDPASACLPA
0801: LLGHSVSHSE AVGSDVELCE LFLSLPSIKQ DNLIRDDNKL ILLASLSDSL EYVADSIERL GQAVPRAASQ SEDNSRNQAT SPRNLASFAD EYRKLATDCL
0901: KVLRVEMQLE TVFHLQEMTN REYLEDEDAE EPDDFVISLT SQITRRDEGM APFISGEKRN YVFGGICGIA ANASIKALAD MRSINLFGVQ QICRNTIALE
1001: QAMAAIPYID GESVQQNLDR VRTYFELLNM PFEALLAFIA EHDQMFTPTE YSNLLKVNVP GRDTPTDAQS RLSEILSH
0001: MGIFNGLPVP SDKTYLREEL ARIDESWAAA RFDSLPHVVH ILTSKDREAD IHILKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKIGDL
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
Arabidopsis Description
SEC8SEC8 [Source:UniProtKB/TrEMBL;Acc:A0A178VA38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.