Factsheet for VIT_04s0008g02340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04947	Soybean	cytosol, endoplasmic reticulum	58.6	77.54
KRH16141	Soybean	cytosol	57.92	76.53
PGSC0003DMT400075284	Potato	cytosol	57.35	75.56
Solyc12g096370.1.1	Tomato	cytosol	57.35	75.22
Solyc08g069100.1.1	Tomato	cytosol	56.0	73.88
PGSC0003DMT400075972	Potato	cytosol	55.77	73.58
CDY60850	Canola	cytosol	55.88	72.97
Bra011281.1-P	Field mustard	cytosol	55.77	72.82
CDY23303	Canola	cytosol	55.77	72.82
CDX68762	Canola	cytosol	55.77	72.71
Bra010232.1-P	Field mustard	cytosol, plastid	39.14	72.38
CDY36434	Canola	cytosol	54.98	72.11
AT4G31540.1	Thale cress	cytosol	55.77	71.76
GSMUA_Achr3P05660_001	Banana	cytosol, mitochondrion	52.6	69.4
GSMUA_Achr5P04880_001	Banana	mitochondrion	50.57	67.42
GSMUA_Achr4P02260_001	Banana	mitochondrion	49.21	65.02
VIT_09s0018g02010.t01	Wine grape	cytosol	46.72	61.55
VIT_09s0018g02030.t01	Wine grape	cytosol	46.27	61.23
Os06t0698600-01	Rice	mitochondrion	43.44	57.92
Zm00001d014642_P001	Maize	cytosol	42.87	56.15
Os02t0149700-01	Rice	cytosol	35.07	55.76
EES06277	Sorghum	cytosol	41.52	54.29
EER88890	Sorghum	cytosol	41.74	54.11
Zm00001d015277_P001	Maize	cytosol	40.95	54.03
TraesCS7B01G325400.1	Wheat	cytosol, plastid	41.29	53.91
TraesCS7A01G424500.1	Wheat	cytosol, plastid	41.18	53.61
TraesCS7D01G417000.1	Wheat	cytosol, plastid	41.06	53.46
TraesCS6A01G119800.1	Wheat	cytosol	40.16	53.06
TraesCS6D01G109700.1	Wheat	cytosol	40.16	53.06
TraesCS6B01G148100.1	Wheat	cytosol	40.05	52.91
HORVU7Hr1G098020.1	Barley	cytosol	40.84	52.86
HORVU6Hr1G021690.1	Barley	cytosol	34.16	52.61
Zm00001d000301_P001	Maize	cytosol	41.74	52.12
VIT_18s0001g09020.t01	Wine grape	cytosol	21.38	27.19

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:100254158	wikigene:100254158	EntrezGene:100259275	wikigene:100259275	MapMan:22.6.3.1
EMBL:AM461728	ProteinID:CAN72418	ProteinID:CAN72418.1	ProteinID:CCB46636	ProteinID:CCB46636.1	ncoils:Coil
InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	UniProt:F6H2V1	EMBL:FN595231	GO:GO:0000145	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0006887
GO:GO:0008150	GO:GO:0009987	EntrezGene:LOC100254158	wikigene:LOC100254158	EntrezGene:LOC100259275	wikigene:LOC100259275
PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF43	SUPFAM:SSF74788	UniParc:UPI000210A06B	ArrayExpress:VIT_04s0008g02340
EnsemblPlantsGene:VIT_04s0008g02340	EnsemblPlants:VIT_04s0008g02340.t01	unigene:Vvi.15429	RefSeq:XP_002280476	RefSeq:XP_002280476.2	RefSeq:XP_002280486
RefSeq:XP_002280486.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:1913794..1923695

Molecular Weight (calculated)

98753.8 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.338

Length

884 amino acids

Sequence
(BLAST)

001: MAVVSDSMIE KLASARRSLK SSLEKSRVLG LALEKSGPRL EEINQRLPSL EAAVRPIRAQ KEALVAVGGH INRAVSPAAA VLNVFDAVHG LEKSLLSDPR
101: NDLPGYLSVL KRLEEALKFL GDNCGLAIQW LEDIVEYLED NLVADERYLS NLKKSLKNLR ELQNDEERVC LDGGLLEAAL DKLECEFRLL LTENSVPLPM
201: SSPSSLGEQP CIAPSPLPVM VIQKLQAIIG RLTANKRLEK CISIYVEVRS SNVRASLQAL DLDYLEISIS EFNDVQSIEG YIAQWGKHLE FAVKHLFEAE
301: YKLCNDVFER IGLDVWMGCF AKIAAQAGIL AFLQFGKTVT ESKKDPIKLL KLLDIFASLN KLRLDFNRLF GGGACIEIQN LTRDLIKSII EGASEIFWEL
401: LFQVELQRQT APPSDGSVPR LVSFLTDYCN RLLGDNYKPI LTQVLVIHRN WKHEKFQERL LVDAILNIIK AIEKNLETWS KGYEDATLAN LFLMNNHWHL
501: HKHLKGTKLG DLLGDSWLKE HDQSKDYYAA IFLKDSWGKL PSLLSREGLM LFSGGRATAR DLVKKRLKSF NEAFDDMYKK QSNWVVSERD LRDKTCQLIV
601: QAVVPVYRSY MQNYGPLVEQ DPSASKYAKY TVQTLENMLA SLFQPKPAKY EEEEEQSRSA AAAAMEVMVE VSSIPAYVGG MTQDKQREEE VGGGVVVGRF
701: SGQRDKGGFL SGSGKRGVGS EKPEESSEAS SLGNLSDDED DEGDDVVSSS GGGGNDVVSA NAGFASLGSL EDSLPIKRGL SNCFSGRSKS FANLSDVNTV
801: ADLQKEENPF NKRRRTLIAY KLSRKNSGFY SWQNPNSMPL LTLKEDPNQE NNSSEDEEED REQKLHQRKF KTFKSTSCFS LADL

Best Arabidopsis Sequence Match ( AT4G31540.1 )
(BLAST)

001: MMAESTGVDR GIQSLIAARK SLKLSLEKSK AIGLALGKTG PRFDEIEQRL PLLEAAVRPI RADGEALKDV GGNINRAVGP AAAVLKVFDA VHGLEKSLLS
101: DPKNDLSSYL SVLKRLEEAL KFLGENCGLA IQWLEDIVEY LDDHHVADEK YLSNLKKSLR GLSEFHNDRG GGEEKERSQL RLDGGLRNAA LDKLENEFRR
201: LLKDNSVPLP MASPSSLGDQ ACIAPSQLPV TVIHKLQAIL GRLRANNRLD KCISIYVEVR SLNVRASLQA LDLDYLDISV SEFNDVQSIE GYIAQWGNHL
301: EFAVKHLFEA EFKLCNDVFE RLGLNVWMDC FSKIAAQAGM LAFLQFGKTV TDSKKDPIKL LKLLDIFTSL NKLRADFNRL FGGAACIEIQ NFTRDLIKRI
401: IDGAAEIFWE LLVQVEIQKQ TPPPSDGGVP RLVSFVTDYC NKLIGDKYKS TLTQVLLIHK SWRSERFQDN QLMVEVLRII KAIEQNLDVW MKAYPDQTLA
501: HFFGMNNHWH LYKNLKGTNI GDHLGDSWLK EHDQYKEYYA TVFLRDSWGK LPSHLSREGL ILFSGGHATA RDLVKKRLKA FNDAFDEMYK KQASWVLPEK
601: DLRDRVCQQI VQAIVPVYRS YMQNYGPLVE KDASSSKYVR YTVVALEKIL SSLYMPKPMR YGSFKGTPPS EKFKNDVDLR RTTSAVV

Arabidopsis Description

ATEXO70G1EXO70-G1 protein [Source:UniProtKB/TrEMBL;Acc:Q7XYW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.