CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16141	Soybean	cytosol	98.05	97.91
PGSC0003DMT400075284	Potato	cytosol	74.25	73.92
Solyc12g096370.1.1	Tomato	cytosol	74.4	73.74
Bra010232.1-P	Field mustard	cytosol, plastid	52.54	73.43
CDY60850	Canola	cytosol	73.8	72.82
CDY36434	Canola	cytosol	73.35	72.7
PGSC0003DMT400075972	Potato	cytosol	72.9	72.69
Solyc08g069100.1.1	Tomato	cytosol	72.9	72.69
Bra011281.1-P	Field mustard	cytosol	73.65	72.67
CDY23303	Canola	cytosol	73.65	72.67
CDX68762	Canola	cytosol	73.2	72.12
AT4G31540.1	Thale cress	cytosol	72.01	70.01
GSMUA_Achr3P05660_001	Banana	cytosol, mitochondrion	67.81	67.61
GSMUA_Achr5P04880_001	Banana	mitochondrion	66.02	66.52
GSMUA_Achr4P02260_001	Banana	mitochondrion	65.12	65.02
Os02t0149700-01	Rice	cytosol	48.8	58.63
VIT_04s0008g02340.t01	Wine grape	plastid	77.54	58.6
Os06t0698600-01	Rice	mitochondrion	57.48	57.92
Zm00001d014642_P001	Maize	cytosol	56.89	56.3
EES06277	Sorghum	cytosol	56.59	55.92
Zm00001d015277_P001	Maize	cytosol	55.84	55.67
TraesCS7B01G325400.1	Wheat	cytosol, plastid	55.84	55.1
TraesCS7A01G424500.1	Wheat	cytosol, plastid	55.84	54.93
HORVU6Hr1G021690.1	Barley	cytosol	47.16	54.88
TraesCS7D01G417000.1	Wheat	cytosol, plastid	55.69	54.79
TraesCS6A01G119800.1	Wheat	cytosol	54.79	54.71
EER88890	Sorghum	cytosol	55.84	54.69
TraesCS6B01G148100.1	Wheat	cytosol	54.64	54.56
TraesCS6D01G109700.1	Wheat	cytosol	54.64	54.56
HORVU7Hr1G098020.1	Barley	cytosol	54.94	53.73
Zm00001d000301_P001	Maize	cytosol	56.44	53.25
KRH47016	Soybean	cytosol	46.86	46.72
KRH44635	Soybean	cytosol	46.86	46.51
KRG90172	Soybean	plastid	5.24	26.32
KRH05572	Soybean	cytosol	27.54	26.25
KRG88765	Soybean	cytosol	26.5	25.43

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:100796139	MapMan:22.6.3.1	EMBL:ACUP02010643	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70
EnsemblPlantsGene:GLYMA_17G197600	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	UniProt:I1MWF0	EnsemblPlants:KRH04947
ProteinID:KRH04947	ProteinID:KRH04947.1	ProteinID:KRH04948.1	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF43
SUPFAM:SSF74788	UniParc:UPI000233E987	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:31199261..31202720

Molecular Weight (calculated)

75295.4 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.149

Length

668 amino acids

Sequence
(BLAST)

001: MEASRIENLI RAKKSLKISL EKSKSVGLAL EKAGPRLDEI RVRLPSLGSA VRPIRAEKDA LAAVGGHINR AVGPAAAVLK VFDAVHGLEK SLLSDPRTDL
101: AGYLSVLKRL QEALRFLGDN CGLAIQWLED IVEYLEDNSV ADKVYLANLK KELKNLRESQ HGELDGGLLD AALGKLEDEF RLLLSENSVP LPMASASGDQ
201: ACIAPSPLPV SVVHKLQAIL GRLIANDRLD RCVGIYVEVR SSNVRASLQA LNLDYLEISL SEFNDVQSIE GYIAQWGKHL EFAVKHLFEA EYKLCNDVFE
301: RIGLDVWMGC FSKIAAQAGI LAFLQFGKTV TESKKDPIKL LKLLDIFASL NKLRLDFNRL FGGAPCVEIQ NLTRDLIKSV IDGAAEIFWE LLVQVELQRP
401: NPPPMDGNVP RLVSFITDYC NKLLGDDYKP ILTQVLIIHR SWKRQSFQEK LLVNEILNIV KAVEQNVETW IKAYDDPILS NFFAMNNHWH LCKHLKGTKL
501: GELLGDSWLR EHEQYKDYYS TIFLRDSWGK LPGHLSREGL ILFSGGRATA RDLVKKRLKK FNEVFDEMYA KQTSWIMPER DLREKTCQLI VQAVVPVYRS
601: YMQNYGPLVE QDASSTKYAK YTVQKLEEML LCLYRPRPVR HGSLRSSTFS AKYGNGVPDL RRTASAVV

Best Arabidopsis Sequence Match ( AT4G31540.1 )
(BLAST)

001: MMAESTGVDR GIQSLIAARK SLKLSLEKSK AIGLALGKTG PRFDEIEQRL PLLEAAVRPI RADGEALKDV GGNINRAVGP AAAVLKVFDA VHGLEKSLLS
101: DPKNDLSSYL SVLKRLEEAL KFLGENCGLA IQWLEDIVEY LDDHHVADEK YLSNLKKSLR GLSEFHNDRG GGEEKERSQL RLDGGLRNAA LDKLENEFRR
201: LLKDNSVPLP MASPSSLGDQ ACIAPSQLPV TVIHKLQAIL GRLRANNRLD KCISIYVEVR SLNVRASLQA LDLDYLDISV SEFNDVQSIE GYIAQWGNHL
301: EFAVKHLFEA EFKLCNDVFE RLGLNVWMDC FSKIAAQAGM LAFLQFGKTV TDSKKDPIKL LKLLDIFTSL NKLRADFNRL FGGAACIEIQ NFTRDLIKRI
401: IDGAAEIFWE LLVQVEIQKQ TPPPSDGGVP RLVSFVTDYC NKLIGDKYKS TLTQVLLIHK SWRSERFQDN QLMVEVLRII KAIEQNLDVW MKAYPDQTLA
501: HFFGMNNHWH LYKNLKGTNI GDHLGDSWLK EHDQYKEYYA TVFLRDSWGK LPSHLSREGL ILFSGGHATA RDLVKKRLKA FNDAFDEMYK KQASWVLPEK
601: DLRDRVCQQI VQAIVPVYRS YMQNYGPLVE KDASSSKYVR YTVVALEKIL SSLYMPKPMR YGSFKGTPPS EKFKNDVDLR RTTSAVV

Arabidopsis Description

ATEXO70G1EXO70-G1 protein [Source:UniProtKB/TrEMBL;Acc:Q7XYW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.