Factsheet for VIT_02s0025g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081340.2.1	Tomato	nucleus	89.62	89.97
PGSC0003DMT400032126	Potato	cytosol	84.7	89.33
KRH41216	Soybean	nucleus	87.42	87.76
KRH59943	Soybean	nucleus	87.29	87.63
CDY39742	Canola	cytosol	72.63	87.09
AT5G41370.1	Thale cress	cytosol	86.25	86.7
AT5G41360.1	Thale cress	cytosol	84.7	85.25
Bra025503.1-P	Field mustard	cytosol	84.18	84.62
CDY58956	Canola	cytosol	83.92	84.35
Os01t0691600-01	Rice	cytosol	63.42	84.31
TraesCS3D01G261400.1	Wheat	cytosol	82.75	84.06
Zm00001d043797_P020	Maize	cytosol	83.14	83.57
TraesCS3A01G261300.1	Wheat	cytosol	82.75	83.51
EES01302	Sorghum	cytosol	83.01	83.44
Bra028496.1-P	Field mustard	cytosol	82.49	83.25
TraesCS3B01G294400.1	Wheat	cytosol	82.49	83.14
CDY45389	Canola	nucleus	67.96	80.99
HORVU3Hr1G064300.26	Barley	plastid	81.71	75.54
KRH01148	Soybean	cytosol	10.89	74.34
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	12.58	48.5

Protein Annotations

EntrezGene:100250174	wikigene:100250174	MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	ProteinID:CCB58185
ProteinID:CCB58185.1	InterPro:ERCC3_RAD25_C	UniProt:F6HUL9	EMBL:FN596251	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100250174
wikigene:LOC100250174	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI0001982B00	ArrayExpress:VIT_02s0025g00110	EnsemblPlantsGene:VIT_02s0025g00110	EnsemblPlants:VIT_02s0025g00110.t01
InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	RefSeq:XP_002273444	RefSeq:XP_002273444.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:264653..274131

Molecular Weight (calculated)

87379.3 Da

IEP (calculated)

8.035

GRAVY (calculated)

-0.508

Length

771 amino acids

Sequence
(BLAST)

001: MGHGEKGRPS KRHKSSSKDE HKNPVVEDED AYYGEEFEDD YRDGEKEGKK RDFTKLELKV DHSNRPLWAC ADGRIFLETF SPLYKQAYDF LIAIAEPVCR
101: PESMHEYNLT PHSLYAAVSV GLETETIIAV LSKLSKTKLP KEMIDFIHAS TANYGKVKLV LKKNRYFVES PFPEVLKTLL RDEVISRSRI SHEGSTGNDG
201: FTISKTVGEI EGRHDELINE AELAAAAEEK ETHSFEVDPA QVENVKQRCL PNALNYPMLE EYDFRNDTVN PDLDMELKPQ AQPRPYQEKS LSKMFGNGRA
301: RSGIIVLPCG AGKSLVGVSA ACRIRKSCLC LATNAVSVDQ WAFQFKLWST IRDEQICRFT SDSKERFRGN AGVVVTTYNM VAFGGKRSEE SEKIIEEIRN
401: REWGLLLMDE VHVVPAHMFR KVISITKSHC KLGLTATLVR EDERITDLNF LIGPKLYEAN WLDLVKGGFI ANVQCAEVWC PMTKEFFAEY LKKENSKKKQ
501: ALYVMNPNKF RACEFLIRFH EQQRGDKIIV FADNLFALTE YAMKLRKPMI YGATSHVERT KILEAFKTHK DVNTIFLSKV GDNSIDIPEA NVIIQISSHA
601: GSRRQEAQRL GRILRAKGRL QDRLAGGKEE YNAFFYSLVS TDTQEMYYST KRQQFLIDQG YSFKIITSLP PPDSGADLSY HRLDEQLALL GKVLSAGDDA
701: VGLEQLDEDA DDIALQKARR SVGSMSAMSG ASGMVYMEYN TGRNKHGGQG QIKGKPKDPS KRHHLFKRRF G

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.