CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025503.1-P	Field mustard	cytosol	99.84	83.7
CDY58956	Canola	cytosol	99.38	83.31
Os01t0691600-01	Rice	cytosol	72.78	80.69
AT5G41370.1	Thale cress	cytosol	94.25	79.01
AT5G41360.1	Thale cress	cytosol	93.47	78.46
CDY45389	Canola	nucleus	76.67	76.2
PGSC0003DMT400032126	Potato	cytosol	83.2	73.19
VIT_02s0025g00110.t01	Wine grape	cytosol	87.09	72.63
Solyc08g081340.2.1	Tomato	nucleus	86.31	72.27
KRH01148	Soybean	cytosol	12.6	71.68
KRH41216	Soybean	nucleus	84.76	70.96
KRH59943	Soybean	nucleus	84.76	70.96
TraesCS3D01G261400.1	Wheat	cytosol	83.36	70.62
TraesCS3A01G261300.1	Wheat	cytosol	83.67	70.42
TraesCS3B01G294400.1	Wheat	cytosol	83.36	70.07
Zm00001d043797_P020	Maize	cytosol	82.58	69.23
EES01302	Sorghum	cytosol	82.43	69.1
HORVU3Hr1G064300.26	Barley	plastid	82.89	63.91
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	14.15	45.5

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	GO:A0A078HPF9	UniProt:A0A078HPF9	EnsemblPlants:CDY39742
ProteinID:CDY39742	ProteinID:CDY39742.1	InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	EnsemblPlantsGene:GSBRNA2T00068530001
InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF04851	PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR11274	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI0004EF32B1
InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	SEG:seg	:	:	:

Description

BnaA04g11110DBnaA04g11110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPF9]

Coordinates

chrLK032456:-:207571..211257

Molecular Weight (calculated)

72642.0 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.434

Length

643 amino acids

Sequence
(BLAST)

001: MGNGERGRSS KKMKYGGKDD HKMKNTQNEE YYLGDDADED SRDGEGEKMN TDFSKLELKP DHGNRPLWAC ADGRIFLETF SPLYKQAYDF LIAIAEPVCR
101: PESMHEYNLT PHSLYAAVSV GLETETIISV LNKLSKTKLP KDMIDFINAS TANYGKVKLV LKKNRYFIES PFPEVLKKLG NDVVISKARF YEPYGGDGFT
201: VGKTSGELEA GHGELLNAAE LAAAAEEKET HSFEIDPALV ETVKQRCLPS ELNYPMLEEY DFRNDNVNPD LDMELKPHAQ PRPYQEKSLS KMFGNGRARS
301: GIIVLPCGAG KSLVGVSAAA RIKKSCLCLA TNAVSVDQWA FQFKLWSTIR DDQICRFTSD SKERFRGNAG VVVTTYNMVA FGGKRSEESE KIIEEMRNRE
401: WGLLLMDEVH VVPAQMFRKV ISITKSHCKL GLTATLVRED EKITDLNFLI GPKLYEANWL DLVKGGFIAN VQCAEVWCPM TKEFFAEYLK KENSKKKQAL
501: YVMNPNKFRA CEFLIRFHEQ QRGDKIIVFA DNLFALTEYA MKLRKPMIYG ATSHIERTKI LEAFKTSKDV NTVFLSKVGD NSIDIPEANV IIQISSHAGS
601: RRQEAQRLGR ILRAKGKIED RMAGGKEEYN AFFYSLVSTD TQV

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.