CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39742	Canola	cytosol	71.68	12.6
KRH59943	Soybean	nucleus	82.3	12.11
KRH41216	Soybean	nucleus	81.42	11.98
Os01t0691600-01	Rice	cytosol	58.41	11.38
PGSC0003DMT400032126	Potato	cytosol	72.57	11.22
AT5G41370.1	Thale cress	cytosol	76.11	11.21
Bra028496.1-P	Field mustard	cytosol	75.22	11.13
CDY58956	Canola	cytosol	75.22	11.08
Bra025503.1-P	Field mustard	cytosol	75.22	11.08
Solyc08g081340.2.1	Tomato	nucleus	75.22	11.07
AT5G41360.1	Thale cress	cytosol	74.34	10.97
VIT_02s0025g00110.t01	Wine grape	cytosol	74.34	10.89
TraesCS3D01G261400.1	Wheat	cytosol	68.14	10.14
TraesCS3A01G261300.1	Wheat	cytosol	68.14	10.08
TraesCS3B01G294400.1	Wheat	cytosol	68.14	10.07
EES01302	Sorghum	cytosol	68.14	10.04
Zm00001d043797_P020	Maize	cytosol	68.14	10.04
HORVU3Hr1G064300.26	Barley	plastid	68.14	9.23
CDY45389	Canola	nucleus	12.39	2.16
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	0.0	0.0
KRH46269	Soybean	extracellular, mitochondrion	0.0	0.0

Protein Annotations

EMBL:ACUP02011502	EnsemblPlants:KRH01148	EnsemblPlantsGene:GLYMA_18G257500	Gene3D:3.40.50.300	InterPro:ERCC3_RAD25_C	InterPro:P-loop_NTPase
PANTHER:PTHR11274	PANTHER:PTHR11274:SF0	PFAM:PF16203	ProteinID:KRH01148	ProteinID:KRH01148.1	SUPFAM:SSF52540
UniParc:UPI000295E7F0	UniProt:K7MUR9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:54327982..54328746

Molecular Weight (calculated)

13231.5 Da

IEP (calculated)

10.300

GRAVY (calculated)

0.056

Length

113 amino acids

Sequence
(BLAST)

001: MQALYVMNPN KFRACEFLIN FHERTCGDKI IVFADNLFAL TEYAMKLRKP MIYGVTSHVE RTKILQAFKT SKDINTIFLS KGKLEDRMVG ARRSIMHFFI
101: PLFQLIPRDV LLN

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.