Factsheet for Bra028496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45389	Canola	nucleus	81.02	95.67
Bra025503.1-P	Field mustard	cytosol	94.9	94.52
AT5G41370.1	Thale cress	cytosol	91.49	91.13
AT5G41360.1	Thale cress	cytosol	90.31	90.08
VIT_02s0025g00110.t01	Wine grape	cytosol	83.25	82.49
Solyc08g081340.2.1	Tomato	nucleus	82.59	82.16
KRH59943	Soybean	nucleus	82.07	81.64
KRH41216	Soybean	nucleus	82.07	81.64
PGSC0003DMT400032126	Potato	cytosol	78.01	81.53
TraesCS3D01G261400.1	Wheat	cytosol	79.45	79.97
TraesCS3A01G261300.1	Wheat	cytosol	79.71	79.71
Os01t0691600-01	Rice	cytosol	60.47	79.66
TraesCS3B01G294400.1	Wheat	cytosol	79.45	79.35
EES01302	Sorghum	cytosol	78.66	78.36
Zm00001d043797_P020	Maize	cytosol	78.66	78.36
KRH01148	Soybean	cytosol	11.13	75.22
HORVU3Hr1G064300.26	Barley	plastid	78.93	72.3
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	11.78	45.0

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra028496	EnsemblPlants:Bra028496.1	EnsemblPlants:Bra028496.1-P
InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006367	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4EI81	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625
PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI000254338E	InterPro:XPB/Ssl2
InterPro:XPB/Ssl2_N	SEG:seg	:	:	:	:

Description

AT5G41370 (E=0.0) XPB1, ATXPB1 | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding

Coordinates

chrA02:+:669420..674145

Molecular Weight (calculated)

86145.2 Da

IEP (calculated)

8.515

GRAVY (calculated)

-0.469

Length

764 amino acids

Sequence
(BLAST)

001: MGNGERGRSS KKMKYGGKMK NIQNQEYYMG DDDAYEDSRD GEGEKMNTDF SKLELKPDHV NRPLWACADG RIFLETYSPL YKQAYDFLIA IAEPVCRPQS
101: MHEYNLTPHS LYAAVSVGLE TETIISVLNK LSKTKLPNDM IDFINASTAN YGKVKLVLKK NRYFIESPFP EVLKKLGDDG VISKARLYSD PYGGDGFTIG
201: KTSGELEAGP GELLNAAELA AAAQEKETHS FEIDPAQVEI VKQRCLPSEL NYPMLEEYDF RNDNVNPDLD MELKPHAQPR PYQEKSLSKM FGNGRARSGI
301: IVLPCGAGKS LVGVSAAARI KKSCLCLATN AVSVDQWAFQ FKLWSTLRDD QICRFTSDSK DRFRGNAGVV VTTYNMVAFG GKRSEESEKI IEEMRNREWG
401: LLLMDEVHVV PAQMFRKVIS ITKSHCKLGL TATLVREDEK ITDLNFLIGP KLYEANWLDL VKGGFIANVL CAEVWCPMTK EFFAEYLKKE NSKKKQALYV
501: MNPNKFRACE FLIRFHEQQR GDKIIVFADN LFALTEYAMK LRKPMIYGAT SHIERTKILE AFKTSKDVNT VFLSKVGDNS IDIPEANVVI QISSHAGSRR
601: QEAQRLGRIL RAKGKIEDRM AGGKEEYNAF FYSLVSTDTQ EMYYSTKRQQ FLIDQGYSFK VITTSLPPPD AGSSLSYNSR EEQLSLLAKV LNAGDDLVGL
701: EQLEEDIDGK ALQATRRSRG VMSVMSGAKG LVYQEFNSGH HKSSGQQFKK PKDPTKRHQL FKTR

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.