Factsheet for TraesCS3B01G294400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G261300.1	Wheat	cytosol	99.48	99.61
TraesCS3D01G261400.1	Wheat	cytosol	98.17	98.95
EES01302	Sorghum	cytosol	93.07	92.83
Os01t0691600-01	Rice	cytosol	70.07	92.41
Zm00001d043797_P020	Maize	cytosol	92.55	92.31
HORVU3Hr1G064300.26	Barley	plastid	97.52	89.45
GSMUA_AchrUn_...	Banana	cytosol	84.71	84.82
CDY39742	Canola	cytosol	70.07	83.36
VIT_02s0025g00110.t01	Wine grape	cytosol	83.14	82.49
AT5G41370.1	Thale cress	cytosol	82.48	82.27
PGSC0003DMT400032126	Potato	cytosol	78.17	81.81
Solyc08g081340.2.1	Tomato	nucleus	82.09	81.77
AT5G41360.1	Thale cress	cytosol	81.7	81.59
Bra025503.1-P	Field mustard	cytosol	80.78	80.57
CDY58956	Canola	cytosol	80.52	80.31
KRH41216	Soybean	nucleus	80.39	80.08
KRH59943	Soybean	nucleus	80.26	79.95
Bra028496.1-P	Field mustard	cytosol	79.35	79.45
CDY45389	Canola	nucleus	65.23	77.13
KRH01148	Soybean	cytosol	10.07	68.14

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:ERCC3_RAD25_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase/UvrB_N
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF04851
PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274
PANTHER:PTHR11274:SF0	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	EnsemblPlantsGene:TraesCS3B01G294400
EnsemblPlants:TraesCS3B01G294400.1	InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr3B:-:473243910..473251135

Molecular Weight (calculated)

85992.0 Da

IEP (calculated)

8.268

GRAVY (calculated)

-0.400

Length

765 amino acids

Sequence
(BLAST)

001: MAGGDGDRAR APKRYKSSAP SKAALVDETA EMNYADDFDD DARDGDNEVK KRDFTKLELK PDHVNRPLWA CADGRIFLET FSPLYKQAYD FLIAIAEPVC
101: RPESMHEYNL TPHSLYAAVS VGLETTTIIS VLSKLSKTKL PHEIIDFIHG STANYGKVKL VLKKNQYFVE SPFPEVLKTL LNDDVILKAR KAPEDCLGAS
201: SSFAVSKTAG EIASGHDLLD GMELAAATED KETHSFEIDS NQVENVKQRC LPNALNFPML EEYDFRNDTV NPDLDMELKP QARPRPYQEK SLSKMFGNGR
301: ARSGIIVLPC GAGKSLVGVS AACRIKKSCL CLATNAVSVD QWAFQFKLWS TIRDEHISRF TSDNKEKFRG MAGVVVTTYN MVAFGGKRSE DSEKIIEEIR
401: SREWGLLLMD EVHVVPAHMF RKVISITKSH CKLGLTATLV REDERITDLN FLIGPKLYEA NWLDLVKGGF IANVQCAEVW CPMTKEFFAE YLKKENSKKK
501: QVLYVMNPNK FRACEFLIRF HEQQRGDKII VFADNLFALT AYAMKLRKPM IYGATSHAER TRILYQFKNS PEVNTVFLSK VGDNSIDIPE ANVIIQISSH
601: AGSRRQEAQR LGRILRAKGK HQDRMAGGKE EYNAFFYSLV STDTQEMYYS TKRQQFLIDQ GYSFKVITSL PPPEEGPNLS FHTLDEQLDL LGKVLSAGDD
701: MIGVEHLEED SDGKALLKAR RSAGLMSAFS GAGGMVYMEY NTGKGKGAKK KDPAKRHTLF KKRYT

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.