Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G41370.1 | Thale cress | cytosol | 95.3 | 95.18 |
| CDY39742 | Canola | cytosol | 78.46 | 93.47 |
| Bra025503.1-P | Field mustard | cytosol | 91.78 | 91.66 |
| CDY58956 | Canola | cytosol | 91.64 | 91.53 |
| Bra028496.1-P | Field mustard | cytosol | 90.08 | 90.31 |
| CDY45389 | Canola | nucleus | 74.28 | 87.94 |
| VIT_02s0025g00110.t01 | Wine grape | cytosol | 85.25 | 84.7 |
| Solyc08g081340.2.1 | Tomato | nucleus | 84.6 | 84.38 |
| PGSC0003DMT400032126 | Potato | cytosol | 80.16 | 83.99 |
| KRH59943 | Soybean | nucleus | 83.55 | 83.33 |
| KRH41216 | Soybean | nucleus | 83.42 | 83.2 |
| TraesCS3D01G261400.1 | Wheat | cytosol | 81.59 | 82.35 |
| Os01t0691600-01 | Rice | cytosol | 62.14 | 82.07 |
| TraesCS3A01G261300.1 | Wheat | cytosol | 81.72 | 81.94 |
| TraesCS3B01G294400.1 | Wheat | cytosol | 81.59 | 81.7 |
| EES01302 | Sorghum | cytosol | 80.94 | 80.83 |
| Zm00001d043797_P020 | Maize | cytosol | 80.81 | 80.7 |
| KRH01148 | Soybean | cytosol | 10.97 | 74.34 |
| HORVU3Hr1G064300.26 | Barley | plastid | 80.81 | 74.22 |
| GSMUA_Achr2P04330_001 | Banana | nucleus, plastid | 12.14 | 46.5 |
Protein Annotations
| MapMan:14.6.3.2.3 | MapMan:15.3.5.6.1.3 | Gene3D:3.40.50.300 | EntrezGene:834138 | UniProt:A0A178UFA0 | ProteinID:AAT36214.1 |
| ProteinID:AED94669.1 | EMBL:AF308595 | ArrayExpress:AT5G41360 | EnsemblPlantsGene:AT5G41360 | RefSeq:AT5G41360 | TAIR:AT5G41360 |
| RefSeq:AT5G41360-TAIR-G | EnsemblPlants:AT5G41360.1 | TAIR:AT5G41360.1 | Unigene:At.24438 | ProteinID:BAB08508.1 | InterPro:ERCC3_RAD25_C |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006289 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006367 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0032508 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| RefSeq:NP_568591.1 | ProteinID:OAO92586.1 | InterPro:P-loop_NTPase | PFAM:PF04851 | PFAM:PF13625 | PFAM:PF16203 |
| PO:PO:0000003 | PO:PO:0000293 | PO:PO:0007131 | PRINTS:PR00851 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR11274 | PANTHER:PTHR11274:SF0 | UniProt:Q9FUG4 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| TIGRFAMs:TIGR00603 | UniParc:UPI00000A138D | InterPro:XPB/Ssl2 | InterPro:XPB/Ssl2_N | Symbol:XPB2 | SEG:seg |
Description
XPB2XPB2 [Source:UniProtKB/TrEMBL;Acc:A0A178UFA0]
Coordinates
chr5:+:16544340..16549327
Molecular Weight (calculated)
86740.7 Da
IEP (calculated)
8.172
GRAVY (calculated)
-0.536
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNDERKRPT KKMKYGGKDD QKMKNIQNVE DYYDDADEDS RDGEGEEKRR DFTDLELKPD HGNRPLWACA DGKIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPG EIIDFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFT SEPYYGGDGF
201: TIGKTSGELE AGPGELLNEA ELAAAAEEKE THSFEIDPAL VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AYQFKLWSTI KDDQICRFTS DSKERFRGNA GVVVTTYNMI AFGGKRSEEA EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DEKITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKT VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLGYH SQEEQLSLLG KVLNAGDDMV
701: GLEQLEEDTD GKALKTRRSM GSMSAMSGAN GRVYMEYNSG RQKSGNQSKK PKDPTKRHNI FKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPG EIIDFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFT SEPYYGGDGF
201: TIGKTSGELE AGPGELLNEA ELAAAAEEKE THSFEIDPAL VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AYQFKLWSTI KDDQICRFTS DSKERFRGNA GVVVTTYNMI AFGGKRSEEA EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DEKITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKT VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLGYH SQEEQLSLLG KVLNAGDDMV
701: GLEQLEEDTD GKALKTRRSM GSMSAMSGAN GRVYMEYNSG RQKSGNQSKK PKDPTKRHNI FKKRYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.